Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G424800.1 | Wheat | nucleus | 91.96 | 90.75 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 85.71 | 84.96 |
| EER88891 | Sorghum | nucleus | 49.11 | 50.0 |
| Os06t0698748-02 | Rice | nucleus | 50.45 | 49.56 |
| Zm00001d014648_P001 | Maize | nucleus | 37.5 | 46.15 |
| Zm00001d036499_P001 | Maize | nucleus | 41.96 | 43.32 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 33.04 | 33.48 |
| CDY68667 | Canola | cytosol | 22.32 | 33.33 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 34.38 | 33.05 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 35.27 | 31.98 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 31.25 | 31.11 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 35.71 | 29.09 |
| PGSC0003DMT400086234 | Potato | nucleus | 20.98 | 26.7 |
| Solyc08g068970.2.1 | Tomato | nucleus | 20.54 | 25.99 |
| Bra031516.1-P | Field mustard | nucleus | 23.66 | 25.85 |
| Bra024004.1-P | Field mustard | nucleus | 24.55 | 25.58 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 19.2 | 25.0 |
| CDY13436 | Canola | nucleus | 23.66 | 24.77 |
| Bra032085.1-P | Field mustard | nucleus | 28.12 | 24.42 |
| CDY23302 | Canola | nucleus | 23.66 | 24.09 |
| Bra010233.1-P | Field mustard | nucleus | 23.66 | 24.09 |
| AT2G24550.1 | Thale cress | nucleus | 26.34 | 24.08 |
| CDY45582 | Canola | nucleus | 26.79 | 23.81 |
| Bra007841.1-P | Field mustard | nucleus | 25.89 | 23.77 |
| CDY20324 | Canola | nucleus | 27.23 | 23.64 |
| CDY36435 | Canola | nucleus | 23.21 | 23.64 |
| Bra020475.1-P | Field mustard | nucleus | 22.77 | 23.61 |
| CDX72307 | Canola | nucleus | 22.32 | 23.36 |
| CDY05394 | Canola | nucleus | 22.77 | 23.29 |
| CDY05462 | Canola | nucleus | 22.32 | 23.26 |
| KRH61944 | Soybean | nucleus | 26.34 | 23.23 |
| KRH52604 | Soybean | nucleus | 25.89 | 23.02 |
| AT4G31510.1 | Thale cress | nucleus | 21.88 | 22.9 |
| CDX76805 | Canola | nucleus | 24.55 | 22.54 |
| CDX87106 | Canola | nucleus | 22.77 | 22.17 |
| CDX88142 | Canola | nucleus | 21.88 | 21.59 |
| Bra009802.1-P | Field mustard | nucleus | 21.88 | 21.59 |
| Bra036527.1-P | Field mustard | nucleus | 21.88 | 21.4 |
| CDY19822 | Canola | nucleus | 21.88 | 21.21 |
| CDY55465 | Canola | nucleus | 21.88 | 20.94 |
| AT5G24890.1 | Thale cress | nucleus | 20.54 | 19.17 |
| KRH04949 | Soybean | extracellular, vacuole | 23.21 | 16.2 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G416800.1 | EnsemblPlantsGene:TraesCS7D01G416800 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF3 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7D:-:535658542..535659456
Molecular Weight (calculated)
23310.0 Da
IEP (calculated)
4.542
GRAVY (calculated)
-0.519
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVVAAAAAV GPAPVAPSPA APYGMCGGGG GGARKRKDVV HYQEEEEEEE AAAAVQGGRL GGEGHGLFVL ETVEEEEERE AEAENERSSI GPVSEGDEEE
101: GEEVESARET PWQRRTKKTG GLASLDALDD ALPIKRGLSG FFSGKSRSFA NLQDVAVAGT TSSKDVLAKP ENPFNKRRRI LRCCSIRRVS STSLTALPPF
201: LPPEPSFNIG NDGVINGGSG GGSG
101: GEEVESARET PWQRRTKKTG GLASLDALDD ALPIKRGLSG FFSGKSRSFA NLQDVAVAGT TSSKDVLAKP ENPFNKRRRI LRCCSIRRVS STSLTALPPF
201: LPPEPSFNIG NDGVINGGSG GGSG
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.