Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042315_P001 | Maize | nucleus | 49.02 | 71.43 |
| Solyc10g017640.1.1 | Tomato | nucleus | 33.33 | 55.74 |
| KRH48297 | Soybean | nucleus | 37.25 | 42.7 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 48.04 | 38.89 |
| TraesCS3A01G435000.1 | Wheat | nucleus | 57.84 | 35.33 |
| TraesCS3A01G434400.1 | Wheat | nucleus | 54.9 | 33.53 |
| EES01980 | Sorghum | nucleus | 51.96 | 32.52 |
| TraesCS3A01G434900.1 | Wheat | nucleus | 52.94 | 32.34 |
| Os01t0922800-01 | Rice | nucleus | 51.96 | 32.32 |
| TraesCS3A01G432900.1 | Wheat | mitochondrion, nucleus | 49.02 | 30.12 |
| TraesCS5A01G520200.1 | Wheat | nucleus, plastid | 56.86 | 28.71 |
| TraesCS7A01G260900.1 | Wheat | nucleus | 52.94 | 26.34 |
| KRH40554 | Soybean | nucleus | 43.14 | 20.85 |
| KRH00625 | Soybean | nucleus | 42.16 | 20.57 |
| PGSC0003DMT400000028 | Potato | nucleus | 44.12 | 20.09 |
| Bra000393.1-P | Field mustard | nucleus | 41.18 | 19.72 |
| CDY60689 | Canola | nucleus | 41.18 | 19.72 |
| CDY53886 | Canola | nucleus | 41.18 | 19.72 |
| CDY37054 | Canola | nucleus | 41.18 | 19.72 |
| Bra039324.1-P | Field mustard | nucleus | 41.18 | 19.72 |
| AT2G45660.1 | Thale cress | nucleus | 41.18 | 19.63 |
| CDY69077 | Canola | nucleus | 40.2 | 19.25 |
| CDY27368 | Canola | nucleus | 40.2 | 19.25 |
| CDX74755 | Canola | nucleus | 40.2 | 19.25 |
| Bra004928.1-P | Field mustard | nucleus | 40.2 | 19.25 |
| PGSC0003DMT400026576 | Potato | nucleus | 40.2 | 19.16 |
| TraesCS5A01G515500.1 | Wheat | nucleus | 41.18 | 19.09 |
| TraesCS6A01G011700.1 | Wheat | nucleus | 47.06 | 18.32 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 40.2 | 17.83 |
| KRH65189 | Soybean | nucleus | 40.2 | 17.3 |
| TraesCS1A01G199900.1 | Wheat | nucleus | 38.24 | 17.11 |
| KRH48299 | Soybean | nucleus | 3.92 | 2.92 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G434700.1 | EnsemblPlantsGene:TraesCS3A01G434700 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF213 | PFAM:PF00319 | PFscan:PS50066 | PRINTS:PR00404 |
| SMART:SM00432 | SUPFAM:SSF55455 | MapMan:15.5.14 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:676850453..676853583
Molecular Weight (calculated)
11654.4 Da
IEP (calculated)
11.805
GRAVY (calculated)
-0.240
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRGRVELR RIKDRTSRQV RFSKRRSGLF KKAFELALLC DTEVSLLVFS PAGRFYEYAS SSLCAVRVFG SSKALLLRPH SSPVIGYERV VKAAACKMQR
101: RQ
101: RQ
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.