Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G009700.1 | Wheat | cytosol | 94.31 | 95.87 |
| HORVU2Hr1G001350.2 | Barley | nucleus | 94.31 | 95.08 |
| TraesCS2A01G007900.1 | Wheat | cytosol, mitochondrion, nucleus | 93.5 | 95.04 |
| Os04t0118500-01 | Rice | plastid | 86.18 | 86.18 |
| Zm00001d025062_P001 | Maize | extracellular, mitochondrion, plastid | 82.93 | 82.26 |
| GSMUA_Achr11P... | Banana | nucleus | 69.92 | 72.88 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 69.92 | 72.88 |
| Bra039913.1-P | Field mustard | cytosol, mitochondrion, nucleus | 66.67 | 68.91 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 66.67 | 68.91 |
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 66.67 | 68.91 |
| Solyc01g110530.2.1 | Tomato | plastid | 65.85 | 68.64 |
| PGSC0003DMT400004094 | Potato | nucleus | 65.85 | 68.64 |
| KRH08096 | Soybean | cytosol | 69.11 | 67.46 |
| Bra024480.1-P | Field mustard | mitochondrion | 64.23 | 66.39 |
| CDY20906 | Canola | mitochondrion | 64.23 | 66.39 |
| VIT_04s0023g03190.t01 | Wine grape | cytosol | 63.41 | 66.1 |
| CDY29218 | Canola | mitochondrion | 63.41 | 65.55 |
| AT2G18040.1 | Thale cress | mitochondrion | 63.41 | 65.55 |
| KRH69799 | Soybean | cytosol | 66.67 | 65.08 |
| PGSC0003DMT400051327 | Potato | nucleus | 65.85 | 63.78 |
| Solyc02g062250.2.1 | Tomato | nucleus | 65.85 | 63.78 |
| TraesCS3B01G116600.1 | Wheat | cytosol, mitochondrion, nucleus | 43.9 | 54.55 |
| TraesCS5B01G513900.1 | Wheat | nucleus | 43.09 | 36.55 |
| TraesCS6B01G233500.1 | Wheat | mitochondrion, plastid | 39.02 | 26.37 |
| CDX87855 | Canola | nucleus | 65.85 | 21.66 |
| OQU79160 | Sorghum | cytosol, nucleus, plastid | 40.65 | 20.16 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G012800.1 | EnsemblPlantsGene:TraesCS2B01G012800 | Gene3D:3.10.50.40 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000297 |
| InterPro:PPIase_PpiC | InterPro:PPIase_PpiC_CS | PANTHER:PTHR10657 | PFAM:PF00639 | PFscan:PS50198 | ScanProsite:PS01096 |
| SUPFAM:SSF54534 | MapMan:18.12.4 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:6307617..6309289
Molecular Weight (calculated)
13216.6 Da
IEP (calculated)
9.954
GRAVY (calculated)
-0.407
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPATGEET VRASHILIKH EGSRRKASWK DPEGRVISAT TRADAAARLG ELRAQILAGR ASFADLAAQH SDCSSARRGG DLGTFGRRQM QKPFEDATYA
101: LKVGEISNII DTESGVHIIL RTA
101: LKVGEISNII DTESGVHIIL RTA
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.