CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDX92641
CDY03445
CDY11019
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18040.1	CDX74755	AT2G45660.1	20129060
AT2G18040.1	CDY27368	AT2G45660.1	20129060
AT2G18040.1	CDY37054	AT2G45660.1	20129060
AT2G18040.1	CDY53886	AT2G45660.1	20129060
AT2G18040.1	CDY60689	AT2G45660.1	20129060
AT2G18040.1	CDY69077	AT2G45660.1	20129060
AT2G18040.1	CDX92641	AT4G24540.1	20129060
AT2G18040.1	CDY03445	AT4G24540.1	20129060
AT2G18040.1	CDY11019	AT4G24540.1	20129060

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38175	Canola	cytosol, mitochondrion, nucleus	30.75	96.64
CDY29218	Canola	mitochondrion	30.48	95.8
CDY25130	Canola	cytosol, mitochondrion, nucleus	30.21	94.96
AT2G18040.1	Thale cress	mitochondrion	30.21	94.96
CDY20906	Canola	mitochondrion	29.95	94.12
GSMUA_Achr8P19300_001	Banana	cytosol	24.6	77.97
KRH08096	Soybean	cytosol	25.94	76.98
GSMUA_Achr11P...	Banana	nucleus	24.06	76.27
VIT_04s0023g03190.t01	Wine grape	cytosol	24.06	76.27
Solyc01g110530.2.1	Tomato	plastid	24.06	76.27
PGSC0003DMT400004094	Potato	nucleus	24.06	76.27
KRH69799	Soybean	cytosol	25.4	75.4
Os04t0663800-01	Rice	cytosol, nucleus	13.9	72.22
EES11766	Sorghum	nucleus	22.46	67.74
Zm00001d025062_P001	Maize	extracellular, mitochondrion, plastid	22.19	66.94
HORVU2Hr1G001350.2	Barley	nucleus	21.66	66.39
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	21.66	65.85
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	21.12	65.29
TraesCS2D01G009700.1	Wheat	cytosol	21.12	65.29
HORVU2Hr1G109660.3	Barley	cytosol	8.02	65.22
Os04t0118500-01	Rice	plastid	21.39	65.04
TraesCS2D01G491300.1	Wheat	mitochondrion	18.45	61.06
HORVU5Hr1G121760.1	Barley	cytosol	6.95	46.43
HORVU6Hr1G068220.3	Barley	cytosol	10.16	43.18
OQU82515	Sorghum	nucleus	23.53	42.51
HORVU4Hr1G072290.1	Barley	cytosol	10.96	42.27
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	8.82	33.33
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	8.82	30.84
HORVU3Hr1G096490.2	Barley	cytosol	10.96	29.29
TraesCS5B01G513900.1	Wheat	nucleus	9.36	24.14
OQU79160	Sorghum	cytosol, nucleus, plastid	12.03	18.15
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	8.29	17.03

Protein Annotations

MapMan:18.12.4	Gene3D:3.10.50.40	Gene3D:3.80.10.10	GO:A0A078DF38	EnsemblPlants:CDX87855	ProteinID:CDX87855
ProteinID:CDX87855.1	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00147038001	InterPro:IPR000297	InterPro:IPR032675
InterPro:LRR_dom_sf	PFAM:PF00639	InterPro:PPIase_PpiC	InterPro:PPIase_PpiC_CS	ScanProsite:PS01096	PFscan:PS50198
PANTHER:PTHR10657	PANTHER:PTHR10657:SF4	SUPFAM:SSF54534	TMHMM:TMhelix	UniParc:UPI0004EC536B	SEG:seg

Description

BnaC06g09170D

Coordinates

chrLK031852:-:773192..778415

Molecular Weight (calculated)

40960.2 Da

IEP (calculated)

9.605

GRAVY (calculated)

-0.361

Length

374 amino acids

Sequence
(BLAST)

001: MTGNSTRPPL INAVKVYTVL YLPEPETDQD EASAMVNIIR NCELEKTVSW QGDPCAPQAF RREGLNCTYP DSEPPRIISL NLTENKLTGS ITHEISKLTQ
101: LIELKKVPVI AIAAPVAGVF ALVVVVLAIF FVVRKNKTYS TAAQGPPSVI AGTVTSETRS SNPTIITKDL RVTYPEVLKP PPTVHLGRGK KVDSSLSSSV
201: GVFLFVDVVE IPSSDSDRKR KKDSVSSTDQ PLEEKPKDKR ADHHHIKHCN KKSKMASRDQ VKASHILIKH QGSRRKASWK DPEGKIIMTT TREAAVEQLK
301: SIREDIVSGK ATFEDVAARV SDCSSAKRGG DLGPFGRGQM QLKPFEEATY ALKVGDISEI VDTDSGVHII KRTA

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.