Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11019 | Canola | nucleus | 88.24 | 90.28 |
| AT4G24540.1 | Thale cress | nucleus | 86.43 | 86.82 |
| CDX92641 | Canola | nucleus | 85.52 | 82.53 |
| KRH62216 | Soybean | nucleus | 20.81 | 69.7 |
| Zm00001d044899_P001 | Maize | nucleus | 19.0 | 59.15 |
| CDX89487 | Canola | nucleus | 57.47 | 53.81 |
| CDY13746 | Canola | nucleus | 56.11 | 52.54 |
| CDX76906 | Canola | nucleus | 54.75 | 51.27 |
| KRH52935 | Soybean | nucleus | 53.85 | 50.85 |
| PGSC0003DMT400024247 | Potato | nucleus | 52.04 | 48.94 |
| GSMUA_Achr10P... | Banana | nucleus | 50.23 | 48.68 |
| Zm00001d018142_P001 | Maize | nucleus | 48.42 | 48.42 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 49.77 | 48.03 |
| Zm00001d052180_P001 | Maize | nucleus | 47.51 | 47.51 |
| Os06t0217300-01 | Rice | nucleus | 47.06 | 46.64 |
| KXG31156 | Sorghum | nucleus | 47.96 | 46.49 |
| Os02t0761000-01 | Rice | nucleus | 47.96 | 46.49 |
| EER88077 | Sorghum | nucleus | 45.7 | 44.89 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 46.15 | 44.74 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 46.15 | 44.74 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 46.15 | 44.74 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 45.7 | 44.69 |
| CDY25607 | Canola | nucleus | 34.39 | 43.43 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 44.8 | 43.04 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 43.89 | 42.92 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 43.44 | 42.11 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 45.25 | 41.67 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 43.44 | 41.03 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 59.28 | 40.94 |
| KXG40019 | Sorghum | nucleus | 42.53 | 40.52 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 43.89 | 40.25 |
| Solyc04g076280.2.1 | Tomato | vacuole | 34.39 | 38.97 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 50.68 | 38.1 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 28.05 | 38.04 |
| Os03t0186600-01 | Rice | nucleus | 42.08 | 37.5 |
| Zm00001d027957_P001 | Maize | nucleus | 42.08 | 36.76 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 22.62 | 27.78 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 29.41 | 27.08 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EN89 | EnsemblPlants:CDY03445 | ProteinID:CDY03445 | ProteinID:CDY03445.1 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0000060 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0010077 | GO:GO:0010220 | GO:GO:0043565 | GO:GO:0045893 | GO:GO:0045944 | GO:GO:0046982 |
| GO:GO:0046983 | GO:GO:0048438 | GO:GO:0048510 | EnsemblPlantsGene:GSBRNA2T00116099001 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EED7B6 | SEG:seg | : |
Description
BnaC01g16370DMADS-box protein AGL24 [Source:Projected from Arabidopsis thaliana (AT4G24540) UniProtKB/Swiss-Prot;Acc:O82794]
Coordinates
chrLK031943:+:497990..501276
Molecular Weight (calculated)
24975.9 Da
IEP (calculated)
7.352
GRAVY (calculated)
-0.576
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKIRIKK IDNLTARQVT FSKRRRGIIK KANELSILCD ADVALIIFSA TGKLFEFSSS SMRDILGRYN LHASNINKMM GPPSPYHQLE NCNLSRLSKE
101: VEDKTKQLRQ MRGEDLEGLN LEELQRLEKS LESGLSRVSE KKGECVMSQI SSLEKRGSEL VDENRRLREQ LVTLEMAKTM ALKEAVETES ATTNVSSYDS
201: GAPIEDDFSD TSLKLGLPSW E
101: VEDKTKQLRQ MRGEDLEGLN LEELQRLEKS LESGLSRVSE KKGECVMSQI SSLEKRGSEL VDENRRLREQ LVTLEMAKTM ALKEAVETES ATTNVSSYDS
201: GAPIEDDFSD TSLKLGLPSW E
001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
Arabidopsis Description
AGL24MADS-box protein AGL24 [Source:UniProtKB/Swiss-Prot;Acc:O82794]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.