Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029424.1-P | Field mustard | nucleus | 76.5 | 95.95 |
| CDX86738 | Canola | nucleus | 96.77 | 95.45 |
| CDY41268 | Canola | nucleus | 28.11 | 88.41 |
| CDY10829 | Canola | nucleus | 28.11 | 88.41 |
| AT4G11880.1 | Thale cress | nucleus | 76.96 | 75.57 |
| CDY68007 | Canola | nucleus | 52.07 | 75.33 |
| CDY00504 | Canola | nucleus | 20.28 | 72.13 |
| CDX76346 | Canola | nucleus | 69.59 | 68.33 |
| CDY55821 | Canola | nucleus | 69.59 | 68.33 |
| CDX98780 | Canola | nucleus | 68.2 | 67.58 |
| KRH57267 | Soybean | nucleus | 60.37 | 57.71 |
| CDY41269 | Canola | nucleus | 45.16 | 57.65 |
| VIT_02s0025g04650.t01 | Wine grape | nucleus | 55.76 | 56.54 |
| KRH03997 | Soybean | nucleus | 58.06 | 56.5 |
| CDY27368 | Canola | nucleus | 55.3 | 56.34 |
| CDY37054 | Canola | nucleus | 55.3 | 56.34 |
| CDX74755 | Canola | nucleus | 54.84 | 55.87 |
| CDY69077 | Canola | nucleus | 54.84 | 55.87 |
| CDY53886 | Canola | nucleus | 54.38 | 55.4 |
| CDY60689 | Canola | nucleus | 54.38 | 55.4 |
| CDY10828 | Canola | nucleus | 43.32 | 55.29 |
| CDY30701 | Canola | nucleus | 50.23 | 52.15 |
| CDY16792 | Canola | nucleus | 45.16 | 50.78 |
| CDX94141 | Canola | nucleus | 28.11 | 50.41 |
| CDY32614 | Canola | nucleus | 24.42 | 47.75 |
| CDY68754 | Canola | nucleus | 41.94 | 47.4 |
| CDY38882 | Canola | nucleus | 45.16 | 44.75 |
| CDY32613 | Canola | nucleus | 45.16 | 44.75 |
| CDY38881 | Canola | nucleus | 41.01 | 43.63 |
| CDY56935 | Canola | nucleus | 39.17 | 41.67 |
| CDY00505 | Canola | nucleus | 41.47 | 41.28 |
| CDY02145 | Canola | nucleus | 40.09 | 41.23 |
| CDY42874 | Canola | nucleus | 41.47 | 39.47 |
| CDY55721 | Canola | nucleus | 39.63 | 39.09 |
| CDX94444 | Canola | nucleus | 38.71 | 38.36 |
| CDY52354 | Canola | nucleus | 38.71 | 38.36 |
| CDY66015 | Canola | nucleus | 38.25 | 37.9 |
| CDY51028 | Canola | nucleus | 39.17 | 36.8 |
| CDY51029 | Canola | nucleus | 28.57 | 34.25 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FK04 | UniProt:A0A078FK04 | EnsemblPlants:CDY13289 | ProteinID:CDY13289 |
| ProteinID:CDY13289.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00071267001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EBA891 | SEG:seg |
Description
BnaC09g23670DBnaC09g23670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK04]
Coordinates
chrLK032033:+:821053..824834
Molecular Weight (calculated)
25058.2 Da
IEP (calculated)
9.786
GRAVY (calculated)
-0.831
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RGKLYEFSSS SSITKTVERY QKRIHDLGSS HKREDNTQQA KGETYGLARK
101: IEQLEISKRK FLGEGLDASS IEELQQLENQ LERSLTKIRA KKYQLLREEL DKLKEKERNL TAENKMLLEK YEMGRGGIIP KTTSEDLDTE ESEMEVVTDL
201: LIGPPPIRHY KKFHPPN
101: IEQLEISKRK FLGEGLDASS IEELQQLENQ LERSLTKIRA KKYQLLREEL DKLKEKERNL TAENKMLLEK YEMGRGGIIP KTTSEDLDTE ESEMEVVTDL
201: LIGPPPIRHY KKFHPPN
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS SSIPKTVERY QKRIQDLGSN HKRNDNSQQS KDETYGLARK
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKERNL IAENKMLMEK CEMQGRGIIG RISSSSSTSE LDIDDNEMEV
201: VTDLFIGPPE TRHFKKFPPS N
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKERNL IAENKMLMEK CEMQGRGIIG RISSSSSTSE LDIDDNEMEV
201: VTDLFIGPPE TRHFKKFPPS N
Arabidopsis Description
AGL14Agamous-like MADS-box protein AGL14 [Source:UniProtKB/Swiss-Prot;Acc:Q38838]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.