Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g035570.1.1 | Tomato | nucleus | 23.32 | 83.33 |
| CDY30701 | Canola | nucleus | 85.49 | 78.95 |
| CDY00504 | Canola | nucleus | 24.87 | 78.69 |
| AT5G62165.2 | Thale cress | nucleus | 85.49 | 78.57 |
| CDY41268 | Canola | nucleus | 26.42 | 73.91 |
| CDY10829 | Canola | nucleus | 26.42 | 73.91 |
| Bra035907.1-P | Field mustard | nucleus | 100.0 | 70.96 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 29.02 | 70.89 |
| Os03t0834466-00 | Rice | nucleus | 19.17 | 56.92 |
| CDY68007 | Canola | nucleus | 42.49 | 54.67 |
| CDY32614 | Canola | nucleus | 30.57 | 53.15 |
| CDY68754 | Canola | nucleus | 52.85 | 53.12 |
| CDY27368 | Canola | nucleus | 56.99 | 51.64 |
| PGSC0003DMT400065060 | Potato | nucleus | 29.53 | 51.35 |
| CDY37054 | Canola | nucleus | 56.48 | 51.17 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 18.65 | 50.7 |
| PGSC0003DMT400062319 | Potato | nucleus | 31.09 | 50.42 |
| CDY69077 | Canola | nucleus | 55.44 | 50.23 |
| CDY60689 | Canola | nucleus | 54.92 | 49.77 |
| CDX74755 | Canola | nucleus | 54.92 | 49.77 |
| CDY53886 | Canola | nucleus | 54.4 | 49.3 |
| KRH35396 | Soybean | nucleus | 53.89 | 48.6 |
| CDY38881 | Canola | nucleus | 51.3 | 48.53 |
| KRG91427 | Soybean | nucleus | 53.37 | 48.13 |
| GSMUA_Achr10P... | Banana | nucleus | 49.74 | 47.52 |
| CDY32613 | Canola | nucleus | 53.37 | 47.03 |
| CDY38882 | Canola | nucleus | 52.85 | 46.58 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 50.78 | 46.01 |
| CDY00505 | Canola | nucleus | 51.81 | 45.87 |
| GSMUA_Achr11P... | Banana | nucleus | 49.22 | 45.67 |
| CDY02145 | Canola | nucleus | 49.74 | 45.5 |
| CDY55721 | Canola | nucleus | 51.81 | 45.45 |
| CDY13289 | Canola | nucleus | 50.78 | 45.16 |
| Solyc03g006830.2.1 | Tomato | nucleus | 51.81 | 45.05 |
| CDX94444 | Canola | nucleus | 50.78 | 44.75 |
| CDY56935 | Canola | nucleus | 47.15 | 44.61 |
| CDY51028 | Canola | nucleus | 52.85 | 44.16 |
| CDX86738 | Canola | nucleus | 50.26 | 44.09 |
| CDY52354 | Canola | nucleus | 49.74 | 43.84 |
| CDY66015 | Canola | nucleus | 49.22 | 43.38 |
| CDX98780 | Canola | nucleus | 48.7 | 42.92 |
| CDX76346 | Canola | nucleus | 46.63 | 40.72 |
| CDY55821 | Canola | nucleus | 46.63 | 40.72 |
| CDY42874 | Canola | nucleus | 47.15 | 39.91 |
| CDY51029 | Canola | nucleus | 36.27 | 38.67 |
| CDX94141 | Canola | nucleus | 18.65 | 29.75 |
| CDY10828 | Canola | nucleus | 24.87 | 28.24 |
| CDY41269 | Canola | nucleus | 24.35 | 27.65 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FVH4 | UniProt:A0A078FVH4 | EnsemblPlants:CDY16792 | ProteinID:CDY16792 |
| ProteinID:CDY16792.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00094672001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE0E4B | SEG:seg |
Description
BnaA09g05900DBnaA09g05900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVH4]
Coordinates
chrLK032067:-:387789..391607
Molecular Weight (calculated)
22836.6 Da
IEP (calculated)
9.854
GRAVY (calculated)
-0.775
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIVFSQ RGRLYEFSSS DMQNTIERYH TYRNDHETSN QYSEMYIQQL KQEASHMIAK
101: IELLEFHKRK LLGQELSSCS LQELQEIDSQ LQRSLGEVRA RKAQMFKEQL EKLKAKEKQL LEENVQLHQK NVIDPWRGSI DQQKKFRVID LNL
101: IELLEFHKRK LLGQELSSCS LQELQEIDSQ LQRSLGEVRA RKAQMFKEQL EKLKAKEKQL LEENVQLHQK NVIDPWRGSI DQQKKFRVID LNL
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.