Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51860.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G51860.1 | CDY50584 | AT1G48150.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00504 | Canola | nucleus | 28.92 | 96.72 |
| Bra029155.1-P | Field mustard | nucleus | 98.04 | 95.69 |
| CDY68754 | Canola | nucleus | 83.82 | 89.06 |
| CDY32614 | Canola | nucleus | 44.12 | 81.08 |
| AT5G51860.1 | Thale cress | nucleus | 81.37 | 78.67 |
| Solyc06g035570.1.1 | Tomato | nucleus | 20.1 | 75.93 |
| CDY51028 | Canola | nucleus | 78.92 | 69.7 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 25.49 | 65.82 |
| CDY41268 | Canola | nucleus | 22.06 | 65.22 |
| CDY10829 | Canola | nucleus | 22.06 | 65.22 |
| CDY52354 | Canola | nucleus | 63.24 | 58.9 |
| CDY66015 | Canola | nucleus | 62.25 | 57.99 |
| CDY38882 | Canola | nucleus | 62.25 | 57.99 |
| CDY32613 | Canola | nucleus | 62.25 | 57.99 |
| CDX94444 | Canola | nucleus | 60.78 | 56.62 |
| CDY55721 | Canola | nucleus | 60.78 | 56.36 |
| CDY00505 | Canola | nucleus | 59.8 | 55.96 |
| CDY56935 | Canola | nucleus | 54.9 | 54.9 |
| CDY02145 | Canola | nucleus | 56.37 | 54.5 |
| CDY42874 | Canola | nucleus | 60.78 | 54.39 |
| CDY30701 | Canola | nucleus | 53.92 | 52.63 |
| CDY16792 | Canola | nucleus | 48.53 | 51.3 |
| PGSC0003DMT400062319 | Potato | nucleus | 29.41 | 50.42 |
| CDY51029 | Canola | nucleus | 44.12 | 49.72 |
| Os03t0834466-00 | Rice | nucleus | 15.69 | 49.23 |
| CDY68007 | Canola | nucleus | 35.29 | 48.0 |
| CDY37054 | Canola | nucleus | 48.04 | 46.01 |
| PGSC0003DMT400065060 | Potato | nucleus | 25.0 | 45.95 |
| CDY27368 | Canola | nucleus | 47.55 | 45.54 |
| KRG91427 | Soybean | nucleus | 47.55 | 45.33 |
| CDY60689 | Canola | nucleus | 47.06 | 45.07 |
| CDX74755 | Canola | nucleus | 46.57 | 44.6 |
| CDY69077 | Canola | nucleus | 46.57 | 44.6 |
| KRH35396 | Soybean | nucleus | 46.57 | 44.39 |
| Solyc03g006830.2.1 | Tomato | nucleus | 48.04 | 44.14 |
| CDY53886 | Canola | nucleus | 46.08 | 44.13 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 45.1 | 43.19 |
| GSMUA_Achr11P... | Banana | nucleus | 43.63 | 42.79 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 14.71 | 42.25 |
| GSMUA_Achr10P... | Banana | nucleus | 41.18 | 41.58 |
| CDX98780 | Canola | nucleus | 44.61 | 41.55 |
| CDY13289 | Canola | nucleus | 43.63 | 41.01 |
| CDX86738 | Canola | nucleus | 43.63 | 40.45 |
| CDX76346 | Canola | nucleus | 43.14 | 39.82 |
| CDY55821 | Canola | nucleus | 43.14 | 39.82 |
| CDY41269 | Canola | nucleus | 24.02 | 28.82 |
| CDY10828 | Canola | nucleus | 23.53 | 28.24 |
| CDX94141 | Canola | nucleus | 16.67 | 28.1 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HMP5 | UniProt:A0A078HMP5 | EnsemblPlants:CDY38881 | ProteinID:CDY38881 |
| ProteinID:CDY38881.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00066725001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE88AC | : | : |
Description
BnaA03g12980DBnaA03g12980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMP5]
Coordinates
chrLK032434:-:165453..168044
Molecular Weight (calculated)
23335.3 Da
IEP (calculated)
9.986
GRAVY (calculated)
-0.636
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIQIKK IENTTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS DIQKTIKRYA EYKGEYFVAE SHPTEQYVQG LKKEMVTMVE
101: KIEMLEVHNQ KLMGKSLAFC SLKELQEIAT QIEKSLHIVR SRKAKLYEDE VEKLKAKGRE LKDERVRLSG RVGEEPSGMP MPSGSKEKED VETDLSIGFP
201: KTRS
101: KIEMLEVHNQ KLMGKSLAFC SLKELQEIAT QIEKSLHIVR SRKAKLYEDE VEKLKAKGRE LKDERVRLSG RVGEEPSGMP MPSGSKEKED VETDLSIGFP
201: KTRS
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KVGERPMGMP SGSKEKEDVE TDLFIGFLKN
201: RP
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KVGERPMGMP SGSKEKEDVE TDLFIGFLKN
201: RP
Arabidopsis Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.