Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019343.1-P | Field mustard | nucleus | 99.09 | 99.09 |
| CDY68007 | Canola | nucleus | 63.93 | 93.33 |
| CDY10829 | Canola | nucleus | 26.94 | 85.51 |
| CDY41268 | Canola | nucleus | 26.94 | 85.51 |
| AT4G22950.1 | Thale cress | nucleus | 84.47 | 84.47 |
| CDY41269 | Canola | nucleus | 64.84 | 83.53 |
| CDY10828 | Canola | nucleus | 63.47 | 81.76 |
| CDX76346 | Canola | nucleus | 77.63 | 76.92 |
| CDY55821 | Canola | nucleus | 77.63 | 76.92 |
| CDY00504 | Canola | nucleus | 20.09 | 72.13 |
| CDX94141 | Canola | nucleus | 38.36 | 69.42 |
| CDX86738 | Canola | nucleus | 68.95 | 68.64 |
| CDY13289 | Canola | nucleus | 67.58 | 68.2 |
| VIT_02s0025g04650.t01 | Wine grape | nucleus | 57.08 | 58.41 |
| CDY27368 | Canola | nucleus | 55.71 | 57.28 |
| CDY37054 | Canola | nucleus | 55.71 | 57.28 |
| CDX74755 | Canola | nucleus | 55.25 | 56.81 |
| CDY69077 | Canola | nucleus | 55.25 | 56.81 |
| CDY53886 | Canola | nucleus | 53.42 | 54.93 |
| KRH57267 | Soybean | nucleus | 56.62 | 54.63 |
| CDY60689 | Canola | nucleus | 52.97 | 54.46 |
| KRH03997 | Soybean | nucleus | 54.79 | 53.81 |
| CDY30701 | Canola | nucleus | 49.77 | 52.15 |
| CDY32614 | Canola | nucleus | 25.11 | 49.55 |
| CDY16792 | Canola | nucleus | 42.92 | 48.7 |
| CDY68754 | Canola | nucleus | 42.01 | 47.92 |
| CDY38881 | Canola | nucleus | 41.55 | 44.61 |
| CDY38882 | Canola | nucleus | 44.29 | 44.29 |
| CDY32613 | Canola | nucleus | 43.84 | 43.84 |
| CDY00505 | Canola | nucleus | 41.55 | 41.74 |
| CDY02145 | Canola | nucleus | 40.18 | 41.71 |
| CDY55721 | Canola | nucleus | 41.1 | 40.91 |
| CDY56935 | Canola | nucleus | 37.9 | 40.69 |
| CDX94444 | Canola | nucleus | 40.18 | 40.18 |
| CDY42874 | Canola | nucleus | 41.55 | 39.91 |
| CDY52354 | Canola | nucleus | 39.73 | 39.73 |
| CDY66015 | Canola | nucleus | 39.27 | 39.27 |
| CDY51028 | Canola | nucleus | 38.81 | 36.8 |
| CDY51029 | Canola | nucleus | 29.22 | 35.36 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078E9L0 | EnsemblPlants:CDX98780 | ProteinID:CDX98780 | ProteinID:CDX98780.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00106863001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE5F03 | SEG:seg | : | : |
Description
BnaA03g45650D
Coordinates
chrLK031906:-:1191187..1196074
Molecular Weight (calculated)
25054.2 Da
IEP (calculated)
10.102
GRAVY (calculated)
-0.746
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTEIKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIIFSP RSKLYEFSSS SIAKTIERYQ KRVKETGINH TRENNSQQAR DETYGLTKKI
101: EQLDISKRKL LGKGIDACSI EELQQLENQL ERGLSRIRAK KYQLLREEIE KLKEEERNLI KENKELKEKW RGMGAIVVAS PSSTLSSAEV NTDSVDNMEV
201: ETGLFIGPPE PRQSKKLPL
101: EQLDISKRKL LGKGIDACSI EELQQLENQL ERGLSRIRAK KYQLLREEIE KLKEEERNLI KENKELKEKW RGMGAIVVAS PSSTLSSAEV NTDSVDNMEV
201: ETGLFIGPPE PRQSKKLPL
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
Arabidopsis Description
AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.