Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66015 | Canola | nucleus | 94.06 | 94.06 |
| CDY00504 | Canola | nucleus | 24.2 | 86.89 |
| CDY55721 | Canola | nucleus | 81.74 | 81.36 |
| CDX94444 | Canola | nucleus | 80.82 | 80.82 |
| Bra010465.1-P | Field mustard | nucleus | 68.04 | 79.68 |
| CDY56935 | Canola | nucleus | 68.04 | 73.04 |
| Solyc06g035570.1.1 | Tomato | nucleus | 17.81 | 72.22 |
| CDY42874 | Canola | nucleus | 74.43 | 71.49 |
| CDY02145 | Canola | nucleus | 66.21 | 68.72 |
| CDY68754 | Canola | nucleus | 58.9 | 67.19 |
| CDY10829 | Canola | nucleus | 21.0 | 66.67 |
| CDY41268 | Canola | nucleus | 21.0 | 66.67 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 22.83 | 63.29 |
| CDY38881 | Canola | nucleus | 58.9 | 63.24 |
| CDY32614 | Canola | nucleus | 31.51 | 62.16 |
| CDY00505 | Canola | nucleus | 56.16 | 56.42 |
| CDY32613 | Canola | nucleus | 53.88 | 53.88 |
| CDY38882 | Canola | nucleus | 53.88 | 53.88 |
| CDY51028 | Canola | nucleus | 54.79 | 51.95 |
| CDY30701 | Canola | nucleus | 48.86 | 51.2 |
| CDY16792 | Canola | nucleus | 43.84 | 49.74 |
| CDY51029 | Canola | nucleus | 41.1 | 49.72 |
| Os03t0834466-00 | Rice | nucleus | 14.61 | 49.23 |
| PGSC0003DMT400062319 | Potato | nucleus | 25.57 | 47.06 |
| PGSC0003DMT400065060 | Potato | nucleus | 23.74 | 46.85 |
| KRH35396 | Soybean | nucleus | 44.29 | 45.33 |
| CDY37054 | Canola | nucleus | 43.84 | 45.07 |
| CDY68007 | Canola | nucleus | 30.59 | 44.67 |
| KRG91427 | Soybean | nucleus | 43.38 | 44.39 |
| CDY27368 | Canola | nucleus | 42.92 | 44.13 |
| Solyc03g006830.2.1 | Tomato | nucleus | 44.29 | 43.69 |
| CDY69077 | Canola | nucleus | 42.01 | 43.19 |
| CDX74755 | Canola | nucleus | 42.01 | 43.19 |
| CDY53886 | Canola | nucleus | 41.55 | 42.72 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 13.7 | 42.25 |
| GSMUA_Achr11P... | Banana | nucleus | 39.73 | 41.83 |
| CDY60689 | Canola | nucleus | 40.18 | 41.31 |
| GSMUA_Achr10P... | Banana | nucleus | 36.99 | 40.1 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 38.81 | 39.91 |
| CDX98780 | Canola | nucleus | 39.73 | 39.73 |
| CDY55821 | Canola | nucleus | 39.27 | 38.91 |
| CDX76346 | Canola | nucleus | 39.27 | 38.91 |
| CDY13289 | Canola | nucleus | 38.36 | 38.71 |
| CDX86738 | Canola | nucleus | 38.36 | 38.18 |
| CDY41269 | Canola | nucleus | 20.55 | 26.47 |
| CDY10828 | Canola | nucleus | 20.09 | 25.88 |
| CDX94141 | Canola | nucleus | 13.24 | 23.97 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078ISC4 | UniProt:A0A078ISC4 | EnsemblPlants:CDY52354 | ProteinID:CDY52354 |
| ProteinID:CDY52354.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00006788001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF4196 | SEG:seg | : |
Description
BnaA08g30890DBnaA08g30890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISC4]
Coordinates
chrLK033080:-:27587..30290
Molecular Weight (calculated)
25304.8 Da
IEP (calculated)
9.040
GRAVY (calculated)
-0.556
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIEIKR IEDVTSRHVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS DMQKMIERCE IHRGEYFGAE RLQKQQYVQD LKNEMAITMD
101: KIKLLQLHCR KLMGQDLDSC SVEELKEITT KIEKSLTIVR SRKAKLNEDR IEKLKAEIVA EREVLNDKSR LRQMFEEQPL WIQSRSLESE KSAPSCSCGN
201: MNLSDVETDL SIGLPQSRV
101: KIKLLQLHCR KLMGQDLDSC SVEELKEITT KIEKSLTIVR SRKAKLNEDR IEKLKAEIVA EREVLNDKSR LRQMFEEQPL WIQSRSLESE KSAPSCSCGN
201: MNLSDVETDL SIGLPQSRV
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
Arabidopsis Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.