Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00504 | Canola | nucleus | 75.93 | 67.21 |
| Solyc10g017640.1.1 | Tomato | nucleus | 72.22 | 63.93 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 85.19 | 58.23 |
| Os03t0834466-00 | Rice | nucleus | 57.41 | 47.69 |
| PGSC0003DMT400065060 | Potato | nucleus | 96.3 | 46.85 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 59.26 | 45.07 |
| CDY32614 | Canola | nucleus | 75.93 | 36.94 |
| CDY16792 | Canola | nucleus | 83.33 | 23.32 |
| Bra013891.1-P | Field mustard | nucleus | 75.93 | 21.69 |
| AT5G62165.2 | Thale cress | nucleus | 83.33 | 21.43 |
| CDY68754 | Canola | nucleus | 75.93 | 21.35 |
| GSMUA_Achr11P... | Banana | nucleus | 81.48 | 21.15 |
| Bra029281.1-P | Field mustard | nucleus | 81.48 | 21.05 |
| CDY30701 | Canola | nucleus | 81.48 | 21.05 |
| Solyc12g056460.1.1 | Tomato | nucleus | 79.63 | 20.87 |
| Bra029314.1-P | Field mustard | nucleus | 72.22 | 20.86 |
| Bra010465.1-P | Field mustard | nucleus | 72.22 | 20.86 |
| GSMUA_Achr10P... | Banana | nucleus | 75.93 | 20.3 |
| Bra028282.1-P | Field mustard | nucleus | 75.93 | 20.3 |
| Bra028283.1-P | Field mustard | nucleus | 74.07 | 20.1 |
| CDY38881 | Canola | nucleus | 75.93 | 20.1 |
| Solyc03g006830.2.1 | Tomato | nucleus | 81.48 | 19.82 |
| Bra029155.1-P | Field mustard | nucleus | 75.93 | 19.62 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 75.93 | 19.25 |
| CDY56935 | Canola | nucleus | 72.22 | 19.12 |
| AT5G51860.1 | Thale cress | nucleus | 74.07 | 18.96 |
| Solyc08g080100.2.1 | Tomato | nucleus | 77.78 | 18.75 |
| CDX94444 | Canola | nucleus | 75.93 | 18.72 |
| CDY55721 | Canola | nucleus | 75.93 | 18.64 |
| CDY00505 | Canola | nucleus | 74.07 | 18.35 |
| Bra029154.1-P | Field mustard | nucleus | 74.07 | 18.26 |
| CDY66015 | Canola | nucleus | 74.07 | 18.26 |
| CDY38882 | Canola | nucleus | 74.07 | 18.26 |
| CDY32613 | Canola | nucleus | 74.07 | 18.26 |
| KRH35396 | Soybean | nucleus | 72.22 | 18.22 |
| Bra012957.1-P | Field mustard | nucleus | 70.37 | 18.01 |
| CDY02145 | Canola | nucleus | 70.37 | 18.01 |
| CDY52354 | Canola | nucleus | 72.22 | 17.81 |
| KRG91427 | Soybean | nucleus | 70.37 | 17.76 |
| CDY51028 | Canola | nucleus | 75.93 | 17.75 |
| CDY42874 | Canola | nucleus | 72.22 | 17.11 |
| AT5G51870.3 | Thale cress | nucleus | 72.22 | 17.03 |
| Bra035907.1-P | Field mustard | nucleus | 83.33 | 16.54 |
| CDY51029 | Canola | nucleus | 20.37 | 6.08 |
| Solyc01g092950.2.1 | Tomato | extracellular | 7.41 | 1.93 |
| Solyc10g017630.1.1 | Tomato | nucleus | 5.56 | 1.72 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4C4S9 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | EnsemblPlantsGene:Solyc06g035570.1 |
| EnsemblPlants:Solyc06g035570.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002765D48 | : | : |
Description
No Description!
Coordinates
chr6:-:24580576..24580740
Molecular Weight (calculated)
6224.6 Da
IEP (calculated)
11.289
GRAVY (calculated)
-0.198
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MKRIENATSR QVTFSKRRNG VIKKAYELSV LCDAQVALII FSNKGRLFQF SSSW
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKVHILHHYL IGI
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKVHILHHYL IGI
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.