Factsheet for Bra029154.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38882	Canola	nucleus	99.54	99.54
Bra028283.1-P	Field mustard	nucleus	69.86	76.88
Solyc06g035570.1.1	Tomato	nucleus	18.26	74.07
AT5G51870.3	Thale cress	nucleus	73.52	70.31
Bra028282.1-P	Field mustard	nucleus	59.82	64.85
VIT_16s0022g02400.t01	Wine grape	nucleus	23.29	64.56
Bra029155.1-P	Field mustard	nucleus	57.08	59.81
Bra029314.1-P	Field mustard	nucleus	47.49	55.62
Bra029281.1-P	Field mustard	nucleus	51.6	54.07
Bra012957.1-P	Field mustard	nucleus	51.14	53.08
Bra013891.1-P	Field mustard	nucleus	45.21	52.38
Os03t0834466-00	Rice	nucleus	15.07	50.77
Bra020826.1-P	Field mustard	nucleus	33.79	50.68
GSMUA_Achr10P...	Banana	nucleus	46.58	50.49
PGSC0003DMT400062319	Potato	nucleus	26.94	49.58
Bra039324.1-P	Field mustard	nucleus	47.95	49.3
Bra010465.1-P	Field mustard	nucleus	42.01	49.2
Bra029424.1-P	Field mustard	nucleus	38.36	48.55
Bra004928.1-P	Field mustard	nucleus	47.03	48.36
GSMUA_Achr11P...	Banana	nucleus	45.66	48.08
PGSC0003DMT400065060	Potato	nucleus	24.2	47.75
Solyc03g006830.2.1	Tomato	nucleus	47.95	47.3
Bra000393.1-P	Field mustard	nucleus	45.66	46.95
GSMUA_Achr2P04340_001	Banana	nucleus	44.29	45.54
KRH35396	Soybean	nucleus	43.84	44.86
KRG91427	Soybean	nucleus	43.84	44.86
Bra019343.1-P	Field mustard	nucleus	44.75	44.75
Os01t0903800-00	Rice	cytosol, nucleus	14.16	43.66
Bra035907.1-P	Field mustard	nucleus	47.95	38.6

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra029154	EnsemblPlants:Bra029154.1	EnsemblPlants:Bra029154.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EK37
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00025400E6	SEG:seg	:	:	:

Description

AT5G51870 (E=5e-062) AGL71 | AGL71 (AGAMOUS-LIKE 71); transcription factor

Coordinates

chrA03:+:6595658..6598630

Molecular Weight (calculated)

25460.2 Da

IEP (calculated)

10.013

GRAVY (calculated)

-0.499

Length

219 amino acids

Sequence
(BLAST)

001: MVRGKIEIKK IENRTSRQIT FSKRRNGLFK KAHELSVLCD AQVAAIVFSQ SGRLYEFSSS EMEKTIERYV KFSPDYFVPG RPQVELYLLE LKKEMDIMVK
101: KIDLLEVHQR KLMGQGLGSC SLAQLQGLET QIEKSLRIIR SRKAELYADQ LLKLKEKERE LLDQRRRLRE EEIRETLVRP MLPVTLHTGK DETGSACRMS
201: KHSSEVETDL FIGFPATRL

Best Arabidopsis Sequence Match ( AT5G51870.4 )
(BLAST)

001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS QMEKIIDRYG KFSNAFYVAE RPQVERYLQE LKMEIDRMVK
101: KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLLE EQNRERLMRP VVPATLQICD KGNTEGGHRT
201: KHSSEVETDL FIGLPVTRL

Arabidopsis Description

AGL71AGAMOUS-like 71 [Source:TAIR;Acc:AT5G51870]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.