Factsheet for Bra020826.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra010623.1-P
Bra011797.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22950.1	Bra000393.1-P	AT2G45660.1	15805477
AT4G22950.1	Bra004928.1-P	AT2G45660.1	15805477
AT4G22950.1	Bra039324.1-P	AT2G45660.1	15805477
AT4G22950.1	Bra010623.1-P	AT4G37940.1	15805477
AT4G22950.1	Bra011797.1-P	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55821	Canola	nucleus	100.0	66.06
CDX76346	Canola	nucleus	100.0	66.06
Bra029424.1-P	Field mustard	nucleus	68.49	57.8
Bra019343.1-P	Field mustard	nucleus	74.66	49.77
AT4G22950.1	Thale cress	nucleus	72.6	48.4
Bra039324.1-P	Field mustard	nucleus	63.7	43.66
Bra000393.1-P	Field mustard	nucleus	63.01	43.19
Bra004928.1-P	Field mustard	nucleus	63.01	43.19
VIT_02s0025g04650.t01	Wine grape	nucleus	60.27	41.12
KRH57267	Soybean	nucleus	60.27	38.77
KRH03997	Soybean	nucleus	58.9	38.56
Bra029314.1-P	Field mustard	nucleus	48.63	37.97
Bra029281.1-P	Field mustard	nucleus	50.68	35.41
Bra010465.1-P	Field mustard	nucleus	45.21	35.29
Bra013891.1-P	Field mustard	nucleus	45.21	34.92
Bra028283.1-P	Field mustard	nucleus	47.26	34.67
Bra029154.1-P	Field mustard	nucleus	50.68	33.79
Bra012957.1-P	Field mustard	nucleus	47.95	33.18
Bra028282.1-P	Field mustard	nucleus	45.21	32.67
Bra029155.1-P	Field mustard	nucleus	43.15	30.14
Bra035907.1-P	Field mustard	nucleus	47.26	25.37

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra020826	EnsemblPlants:Bra020826.1	EnsemblPlants:Bra020826.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4DWD2	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002545FE0	SEG:seg	:	:	:	:

Description

AT4G22950 (E=2e-026) AGL19, GL19 | AGL19 (AGAMOUS-LIKE 19); transcription factor

Coordinates

chrA08:-:11838766..11842376

Molecular Weight (calculated)

16160.5 Da

IEP (calculated)

8.874

GRAVY (calculated)

-0.338

Length

146 amino acids

Sequence
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP TSKLYEFSSS RKMLGEGIDV CSIEELHQLE NQLERGLTRI RAKKLSGMGA
101: IVVASSSSTL TSSEVNTDGN DSMEVETGLF IGPPEPRQSK KIYPQC

Best Arabidopsis Sequence Match ( AT4G11880.1 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS SSIPKTVERY QKRIQDLGSN HKRNDNSQQS KDETYGLARK
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKERNL IAENKMLMEK CEMQGRGIIG RISSSSSTSE LDIDDNEMEV
201: VTDLFIGPPE TRHFKKFPPS N

Arabidopsis Description

AGL14Agamous-like MADS-box protein AGL14 [Source:UniProtKB/Swiss-Prot;Acc:Q38838]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.