Factsheet for Bra019343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra010623.1-P
Bra011797.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22950.1	Bra000393.1-P	AT2G45660.1	15805477
AT4G22950.1	Bra004928.1-P	AT2G45660.1	15805477
AT4G22950.1	Bra039324.1-P	AT2G45660.1	15805477
AT4G22950.1	Bra010623.1-P	AT4G37940.1	15805477
AT4G22950.1	Bra011797.1-P	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98780	Canola	nucleus	99.09	99.09
CDY68007	Canola	nucleus	63.93	93.33
AT4G22950.1	Thale cress	nucleus	85.39	85.39
Bra020826.1-P	Field mustard	nucleus	49.77	74.66
Bra029424.1-P	Field mustard	nucleus	54.34	68.79
VIT_02s0025g04650.t01	Wine grape	nucleus	57.99	59.35
Bra039324.1-P	Field mustard	nucleus	56.62	58.22
Bra004928.1-P	Field mustard	nucleus	56.16	57.75
Bra000393.1-P	Field mustard	nucleus	54.34	55.87
KRH57267	Soybean	nucleus	57.08	55.07
KRH03997	Soybean	nucleus	55.25	54.26
Bra029281.1-P	Field mustard	nucleus	50.23	52.63
Bra028282.1-P	Field mustard	nucleus	42.92	46.53
Bra029154.1-P	Field mustard	nucleus	44.75	44.75
Bra029314.1-P	Field mustard	nucleus	37.44	43.85
Bra028283.1-P	Field mustard	nucleus	39.27	43.22
Bra029155.1-P	Field mustard	nucleus	41.1	43.06
Bra012957.1-P	Field mustard	nucleus	40.18	41.71
Bra013891.1-P	Field mustard	nucleus	35.62	41.27
Bra010465.1-P	Field mustard	nucleus	32.42	37.97
Bra035907.1-P	Field mustard	nucleus	45.66	36.76

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra019343	EnsemblPlants:Bra019343.1	EnsemblPlants:Bra019343.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4DS50
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002540E10	SEG:seg	:	:

Description

AT4G22950 (E=2e-077) AGL19, GL19 | AGL19 (AGAMOUS-LIKE 19); transcription factor

Coordinates

chrA03:-:24781509..24785969

Molecular Weight (calculated)

25069.2 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.744

Length

219 amino acids

Sequence
(BLAST)

001: MVRGKTEIKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIIFSP RSKLYEFSSS SIAKTIERYQ KRVKETGINH TRENNSQQAR DETYGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL ERGLSRIRAK KYQLLREEIE KLKEEERNLI KENKELKEKW RGMGAIVVAS PSSTLSSAEV NTDSVDNMEV
201: ETGLFIGPPE PRQSKKLPL

Best Arabidopsis Sequence Match ( AT4G22950.3 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN

Arabidopsis Description

AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.