CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69345
CDX74755
CDX75686
CDX90394
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22950.1	CDX74755	AT2G45660.1	15805477
AT4G22950.1	CDY27368	AT2G45660.1	15805477
AT4G22950.1	CDY37054	AT2G45660.1	15805477
AT4G22950.1	CDY53886	AT2G45660.1	15805477
AT4G22950.1	CDY60689	AT2G45660.1	15805477
AT4G22950.1	CDY69077	AT2G45660.1	15805477
AT4G22950.1	CDX69345	AT4G37940.1	15805477
AT4G22950.1	CDX75686	AT4G37940.1	15805477
AT4G22950.1	CDX90394	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41268	Canola	nucleus	39.33	85.51
CDY10829	Canola	nucleus	39.33	85.51
CDX94141	Canola	nucleus	62.67	77.69
CDY00504	Canola	nucleus	29.33	72.13
Bra019343.1-P	Field mustard	nucleus	93.33	63.93
CDX98780	Canola	nucleus	93.33	63.93
AT4G22950.1	Thale cress	nucleus	84.0	57.53
CDX76346	Canola	nucleus	82.0	55.66
CDY55821	Canola	nucleus	82.0	55.66
CDX86738	Canola	nucleus	77.33	52.73
CDY13289	Canola	nucleus	75.33	52.07
CDY32614	Canola	nucleus	35.33	47.75
VIT_02s0025g04650.t01	Wine grape	nucleus	65.33	45.79
CDY27368	Canola	nucleus	64.0	45.07
CDY37054	Canola	nucleus	64.0	45.07
CDY41269	Canola	nucleus	50.67	44.71
CDX74755	Canola	nucleus	63.33	44.6
CDY69077	Canola	nucleus	63.33	44.6
CDY10828	Canola	nucleus	50.0	44.12
CDY53886	Canola	nucleus	62.0	43.66
CDY60689	Canola	nucleus	61.33	43.19
CDY16792	Canola	nucleus	54.67	42.49
KRH57267	Soybean	nucleus	64.0	42.29
KRH03997	Soybean	nucleus	62.67	42.15
CDY30701	Canola	nucleus	57.33	41.15
CDY68754	Canola	nucleus	48.0	37.5
CDY38881	Canola	nucleus	48.0	35.29
CDY38882	Canola	nucleus	50.67	34.7
CDY32613	Canola	nucleus	50.0	34.25
CDY00505	Canola	nucleus	49.33	33.95
CDY56935	Canola	nucleus	45.33	33.33
CDY02145	Canola	nucleus	44.67	31.75
CDY51028	Canola	nucleus	47.33	30.74
CDY52354	Canola	nucleus	44.67	30.59
CDX94444	Canola	nucleus	44.67	30.59
CDY66015	Canola	nucleus	44.67	30.59
CDY55721	Canola	nucleus	44.67	30.45
CDY42874	Canola	nucleus	46.0	30.26
CDY51029	Canola	nucleus	30.67	25.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078JRF5	UniProt:A0A078JRF5	EnsemblPlants:CDY68007	ProteinID:CDY68007
ProteinID:CDY68007.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00068419001	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EAE98F	SEG:seg

Description

BnaCnng57290DBnaCnng57290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRF5]

Coordinates

chrLK036756:+:2044..5255

Molecular Weight (calculated)

17304.0 Da

IEP (calculated)

10.657

GRAVY (calculated)

-0.569

Length

150 amino acids

Sequence
(BLAST)

001: MVRGKTEIKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIIFSP RSKLYEFSSS SIAKTIERYQ KRVKETGINH TRDNNSQQAR DETYGLTKKI
101: EQLEISKRKL LGKGIVACSI EELQQLENQL ERGLSRIRAK KVFFFYINTA

Best Arabidopsis Sequence Match ( AT4G11880.2 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS SSIPKTVERY QKRIQDLGSN HKRNDNSQQS KDETYGLARK
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKVTCS FFINLVQMYW SGTNHISHN

Arabidopsis Description

AGL14Agamous-like MADS-box protein AGL14 [Source:UniProtKB/Swiss-Prot;Acc:Q38838]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.