Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02145 | Canola | nucleus | 89.71 | 86.73 |
| CDY00504 | Canola | nucleus | 25.49 | 85.25 |
| Solyc06g035570.1.1 | Tomato | nucleus | 19.12 | 72.22 |
| CDY41268 | Canola | nucleus | 24.02 | 71.01 |
| CDY10829 | Canola | nucleus | 24.02 | 71.01 |
| CDY42874 | Canola | nucleus | 78.43 | 70.18 |
| CDY52354 | Canola | nucleus | 73.04 | 68.04 |
| CDY66015 | Canola | nucleus | 71.57 | 66.67 |
| CDX94444 | Canola | nucleus | 70.1 | 65.3 |
| CDY55721 | Canola | nucleus | 70.1 | 65.0 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 25.0 | 64.56 |
| CDY68754 | Canola | nucleus | 55.39 | 58.85 |
| CDY32614 | Canola | nucleus | 30.88 | 56.76 |
| CDY38881 | Canola | nucleus | 54.9 | 54.9 |
| CDY00505 | Canola | nucleus | 55.39 | 51.83 |
| CDY32613 | Canola | nucleus | 53.92 | 50.23 |
| CDY38882 | Canola | nucleus | 53.43 | 49.77 |
| CDY30701 | Canola | nucleus | 49.02 | 47.85 |
| PGSC0003DMT400065060 | Potato | nucleus | 25.98 | 47.75 |
| Os03t0834466-00 | Rice | nucleus | 15.2 | 47.69 |
| CDY16792 | Canola | nucleus | 44.61 | 47.15 |
| CDY68007 | Canola | nucleus | 33.33 | 45.33 |
| CDY51028 | Canola | nucleus | 50.49 | 44.59 |
| PGSC0003DMT400062319 | Potato | nucleus | 25.0 | 42.86 |
| CDY37054 | Canola | nucleus | 44.61 | 42.72 |
| CDY69077 | Canola | nucleus | 44.61 | 42.72 |
| CDX74755 | Canola | nucleus | 44.61 | 42.72 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 14.71 | 42.25 |
| CDY27368 | Canola | nucleus | 44.12 | 42.25 |
| CDY51029 | Canola | nucleus | 37.25 | 41.99 |
| CDY53886 | Canola | nucleus | 43.63 | 41.78 |
| KRG91427 | Soybean | nucleus | 43.63 | 41.59 |
| CDY60689 | Canola | nucleus | 43.14 | 41.31 |
| KRH35396 | Soybean | nucleus | 43.14 | 41.12 |
| GSMUA_Achr10P... | Banana | nucleus | 40.2 | 40.59 |
| GSMUA_Achr11P... | Banana | nucleus | 40.69 | 39.9 |
| Solyc03g006830.2.1 | Tomato | nucleus | 43.14 | 39.64 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 41.18 | 39.44 |
| CDY13289 | Canola | nucleus | 41.67 | 39.17 |
| CDX86738 | Canola | nucleus | 41.67 | 38.64 |
| CDY55821 | Canola | nucleus | 41.18 | 38.01 |
| CDX76346 | Canola | nucleus | 41.18 | 38.01 |
| CDX98780 | Canola | nucleus | 40.69 | 37.9 |
| CDY41269 | Canola | nucleus | 18.63 | 22.35 |
| CDY10828 | Canola | nucleus | 18.14 | 21.76 |
| CDX94141 | Canola | nucleus | 12.25 | 20.66 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IY45 | UniProt:A0A078IY45 | EnsemblPlants:CDY56935 | ProteinID:CDY56935 |
| ProteinID:CDY56935.1 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00020288001 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEFFA8 | SEG:seg | : | : |
Description
BnaC07g49900DBnaC07g49900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY45]
Coordinates
chrLK033533:-:11606..15235
Molecular Weight (calculated)
23364.2 Da
IEP (calculated)
7.411
GRAVY (calculated)
-0.513
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIEIKR IENKTSRQIT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYEFASS DMKKMMEQCE IYRSGYFHAE RLQEEDDVQD LKNEVTVMVN
101: SIELLQLHCR KLMGQDLGSC SVDELNKITI QIEKSLTLIR SRKAKVHEEE VGKLKAEFEE KPLWMQSRSL ESENNASSSS SAFENMNISD VETDLCIGLP
201: RSQV
101: SIELLQLHCR KLMGQDLGSC SVDELNKITI QIEKSLTLIR SRKAKVHEEE VGKLKAEFEE KPLWMQSRSL ESENNASSSS SAFENMNISD VETDLCIGLP
201: RSQV
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
Arabidopsis Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.