Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51860.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G51860.1 | CDY50584 | AT1G48150.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00504 | Canola | nucleus | 52.25 | 95.08 |
| Solyc06g035570.1.1 | Tomato | nucleus | 36.94 | 75.93 |
| CDY41268 | Canola | nucleus | 40.54 | 65.22 |
| CDY10829 | Canola | nucleus | 40.54 | 65.22 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 45.95 | 64.56 |
| Os03t0834466-00 | Rice | nucleus | 29.73 | 50.77 |
| PGSC0003DMT400062319 | Potato | nucleus | 51.35 | 47.9 |
| CDY68754 | Canola | nucleus | 78.38 | 45.31 |
| CDY38881 | Canola | nucleus | 81.08 | 44.12 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 27.93 | 43.66 |
| PGSC0003DMT400065060 | Potato | nucleus | 43.24 | 43.24 |
| Bra029155.1-P | Field mustard | nucleus | 81.08 | 43.06 |
| AT5G51860.1 | Thale cress | nucleus | 72.97 | 38.39 |
| CDY51028 | Canola | nucleus | 77.48 | 37.23 |
| CDY68007 | Canola | nucleus | 47.75 | 35.33 |
| CDY52354 | Canola | nucleus | 62.16 | 31.51 |
| CDY66015 | Canola | nucleus | 61.26 | 31.05 |
| CDY56935 | Canola | nucleus | 56.76 | 30.88 |
| CDX94444 | Canola | nucleus | 60.36 | 30.59 |
| CDY16792 | Canola | nucleus | 53.15 | 30.57 |
| CDY00505 | Canola | nucleus | 59.46 | 30.28 |
| CDY55721 | Canola | nucleus | 59.46 | 30.0 |
| CDY30701 | Canola | nucleus | 54.95 | 29.19 |
| CDY02145 | Canola | nucleus | 54.95 | 28.91 |
| CDY32613 | Canola | nucleus | 56.76 | 28.77 |
| CDY38882 | Canola | nucleus | 56.76 | 28.77 |
| CDY42874 | Canola | nucleus | 57.66 | 28.07 |
| KRH35396 | Soybean | nucleus | 53.15 | 27.57 |
| KRG91427 | Soybean | nucleus | 52.25 | 27.1 |
| CDY37054 | Canola | nucleus | 51.35 | 26.76 |
| CDY27368 | Canola | nucleus | 50.45 | 26.29 |
| CDY60689 | Canola | nucleus | 50.45 | 26.29 |
| CDY53886 | Canola | nucleus | 50.45 | 26.29 |
| CDY69077 | Canola | nucleus | 49.55 | 25.82 |
| CDX74755 | Canola | nucleus | 49.55 | 25.82 |
| CDX98780 | Canola | nucleus | 49.55 | 25.11 |
| GSMUA_Achr11P... | Banana | nucleus | 45.95 | 24.52 |
| CDX76346 | Canola | nucleus | 48.65 | 24.43 |
| CDY55821 | Canola | nucleus | 48.65 | 24.43 |
| CDY13289 | Canola | nucleus | 47.75 | 24.42 |
| GSMUA_Achr10P... | Banana | nucleus | 44.14 | 24.26 |
| CDX86738 | Canola | nucleus | 47.75 | 24.09 |
| Solyc03g006830.2.1 | Tomato | nucleus | 47.75 | 23.87 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 44.14 | 23.0 |
| CDY51029 | Canola | nucleus | 29.73 | 18.23 |
| CDX94141 | Canola | nucleus | 12.61 | 11.57 |
| CDY41269 | Canola | nucleus | 10.81 | 7.06 |
| CDY10828 | Canola | nucleus | 9.91 | 6.47 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078H5A3 | UniProt:A0A078H5A3 | EnsemblPlants:CDY32614 | ProteinID:CDY32614 |
| ProteinID:CDY32614.1 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00052639001 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF337 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE2789 | : | : |
Description
BnaC03g15820DBnaC03g15820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5A3]
Coordinates
chrLK032297:+:234524..237642
Molecular Weight (calculated)
12900.5 Da
IEP (calculated)
10.084
GRAVY (calculated)
-0.305
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIQIKK IENTTSRQVT FSKRRSGLLK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS DIQKTIKRYA EYKGEYFVAE SHPTEQYVQV SFYISVLSHF
101: YVSSITYRNL Y
101: YVSSITYRNL Y
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
Arabidopsis Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.