Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00504 | Canola | nucleus | 26.07 | 90.16 |
| Bra028282.1-P | Field mustard | nucleus | 80.09 | 83.66 |
| CDY68754 | Canola | nucleus | 75.36 | 82.81 |
| CDY38881 | Canola | nucleus | 78.67 | 81.37 |
| Bra029155.1-P | Field mustard | nucleus | 78.67 | 79.43 |
| Solyc06g035570.1.1 | Tomato | nucleus | 18.96 | 74.07 |
| CDY32614 | Canola | nucleus | 38.39 | 72.97 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 24.64 | 65.82 |
| CDY51028 | Canola | nucleus | 72.04 | 65.8 |
| AT5G51870.3 | Thale cress | nucleus | 61.61 | 56.77 |
| AT5G62165.2 | Thale cress | nucleus | 51.66 | 51.9 |
| PGSC0003DMT400062319 | Potato | nucleus | 27.96 | 49.58 |
| Os03t0834466-00 | Rice | nucleus | 15.17 | 49.23 |
| PGSC0003DMT400065060 | Potato | nucleus | 25.12 | 47.75 |
| AT2G45660.1 | Thale cress | nucleus | 45.97 | 45.33 |
| KRG91427 | Soybean | nucleus | 45.97 | 45.33 |
| KRH35396 | Soybean | nucleus | 45.02 | 44.39 |
| Solyc03g006830.2.1 | Tomato | nucleus | 46.45 | 44.14 |
| GSMUA_Achr11P... | Banana | nucleus | 43.13 | 43.75 |
| GSMUA_Achr10P... | Banana | nucleus | 41.23 | 43.07 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 43.13 | 42.72 |
| AT4G11880.1 | Thale cress | nucleus | 44.55 | 42.53 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 14.22 | 42.25 |
| AT4G22950.1 | Thale cress | nucleus | 43.6 | 42.01 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:835261 | ProteinID:AED96136.1 | ProteinID:AED96137.1 | ArrayExpress:AT5G51860 |
| EnsemblPlantsGene:AT5G51860 | RefSeq:AT5G51860 | TAIR:AT5G51860 | RefSeq:AT5G51860-TAIR-G | EnsemblPlants:AT5G51860.1 | TAIR:AT5G51860.1 |
| EMBL:AY141221 | ProteinID:BAB11255.1 | ncoils:Coil | EMBL:DQ447061 | EMBL:DQ653360 | GO:GO:0000003 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_001078745.1 |
| RefSeq:NP_199999.1 | PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0004507 |
| PO:PO:0005660 | PO:PO:0009001 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009047 | PO:PO:0009049 |
| PO:PO:0009052 | PO:PO:0009072 | PO:PO:0020121 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | UniProt:Q9FLH5 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A2C48 | : | : | : |
Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
Coordinates
chr5:-:21081844..21084427
Molecular Weight (calculated)
24635.3 Da
IEP (calculated)
10.178
GRAVY (calculated)
-0.595
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.