Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029281.1-P | Field mustard | nucleus | 85.71 | 86.12 |
| CDY30701 | Canola | nucleus | 85.71 | 86.12 |
| CDY16792 | Canola | nucleus | 78.57 | 85.49 |
| Solyc06g035570.1.1 | Tomato | nucleus | 21.43 | 83.33 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 27.62 | 73.42 |
| Bra035907.1-P | Field mustard | nucleus | 80.48 | 62.13 |
| Os03t0834466-00 | Rice | nucleus | 18.1 | 58.46 |
| AT2G45660.1 | Thale cress | nucleus | 57.14 | 56.07 |
| PGSC0003DMT400065060 | Potato | nucleus | 29.05 | 54.95 |
| KRH35396 | Soybean | nucleus | 53.33 | 52.34 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 17.62 | 52.11 |
| KRG91427 | Soybean | nucleus | 52.86 | 51.87 |
| AT5G51860.1 | Thale cress | nucleus | 51.9 | 51.66 |
| GSMUA_Achr10P... | Banana | nucleus | 49.52 | 51.49 |
| GSMUA_Achr11P... | Banana | nucleus | 50.48 | 50.96 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 51.43 | 50.7 |
| AT4G22950.1 | Thale cress | nucleus | 52.86 | 50.68 |
| AT5G51870.3 | Thale cress | nucleus | 54.29 | 49.78 |
| AT4G11880.1 | Thale cress | nucleus | 52.38 | 49.77 |
| PGSC0003DMT400062319 | Potato | nucleus | 28.1 | 49.58 |
| Solyc03g006830.2.1 | Tomato | nucleus | 51.9 | 49.1 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:836337 | ProteinID:AED97572.1 | ProteinID:AED97573.1 | ProteinID:AED97574.1 |
| ProteinID:AED97575.1 | Symbol:AGL42 | EMBL:AK318667 | ProteinID:ANM68468.1 | ArrayExpress:AT5G62165 | EnsemblPlantsGene:AT5G62165 |
| RefSeq:AT5G62165 | TAIR:AT5G62165 | RefSeq:AT5G62165-TAIR-G | EnsemblPlants:AT5G62165.2 | TAIR:AT5G62165.2 | EMBL:AY054220 |
| EMBL:AY065206 | EMBL:AY066035 | EMBL:AY096509 | EMBL:AY141213 | ProteinID:BAB10179.1 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009838 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 |
| GO:GO:0010150 | GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0080187 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_001032123.1 | RefSeq:NP_001190593.1 | RefSeq:NP_001330222.1 |
| RefSeq:NP_568952.1 | RefSeq:NP_851247.1 | PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020149 | PO:PO:0025022 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 |
| UniProt:Q9FIS1 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00000A15C7 | SEG:seg | : | : | : | : |
Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
Coordinates
chr5:+:24964646..24968607
Molecular Weight (calculated)
24674.8 Da
IEP (calculated)
9.957
GRAVY (calculated)
-0.805
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.