Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g035570.1.1 | Tomato | nucleus | 19.82 | 81.48 |
| PGSC0003DMT400062319 | Potato | nucleus | 38.29 | 71.43 |
| CDY00504 | Canola | nucleus | 19.37 | 70.49 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 22.52 | 63.29 |
| Solyc10g017640.1.1 | Tomato | nucleus | 17.12 | 62.3 |
| Os03t0834466-00 | Rice | nucleus | 15.32 | 52.31 |
| CDY68754 | Canola | nucleus | 45.05 | 52.08 |
| AT5G62165.2 | Thale cress | nucleus | 49.1 | 51.9 |
| CDY16792 | Canola | nucleus | 45.05 | 51.81 |
| Solyc12g056460.1.1 | Tomato | nucleus | 47.75 | 51.46 |
| CDY30701 | Canola | nucleus | 48.2 | 51.2 |
| Bra029281.1-P | Field mustard | nucleus | 48.2 | 51.2 |
| Bra028282.1-P | Field mustard | nucleus | 45.5 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 46.4 | 49.52 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 15.77 | 49.3 |
| Solyc08g080100.2.1 | Tomato | nucleus | 49.1 | 48.66 |
| CDY32613 | Canola | nucleus | 47.75 | 48.4 |
| KRH35396 | Soybean | nucleus | 46.4 | 48.13 |
| CDY38881 | Canola | nucleus | 44.14 | 48.04 |
| Bra029154.1-P | Field mustard | nucleus | 47.3 | 47.95 |
| CDY38882 | Canola | nucleus | 47.3 | 47.95 |
| CDY32614 | Canola | nucleus | 23.87 | 47.75 |
| KRG91427 | Soybean | nucleus | 45.95 | 47.66 |
| Bra028283.1-P | Field mustard | nucleus | 42.34 | 47.24 |
| GSMUA_Achr10P... | Banana | nucleus | 42.34 | 46.53 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 44.59 | 46.48 |
| AT5G51860.1 | Thale cress | nucleus | 44.14 | 46.45 |
| Bra029155.1-P | Field mustard | nucleus | 43.24 | 45.93 |
| Bra013891.1-P | Field mustard | nucleus | 38.74 | 45.5 |
| Bra029314.1-P | Field mustard | nucleus | 38.29 | 45.45 |
| CDY00505 | Canola | nucleus | 44.59 | 45.41 |
| CDY66015 | Canola | nucleus | 44.14 | 44.75 |
| CDY52354 | Canola | nucleus | 43.69 | 44.29 |
| AT5G51870.3 | Thale cress | nucleus | 45.5 | 44.1 |
| CDY55721 | Canola | nucleus | 43.69 | 44.09 |
| CDY02145 | Canola | nucleus | 41.89 | 44.08 |
| Bra012957.1-P | Field mustard | nucleus | 41.89 | 44.08 |
| CDX94444 | Canola | nucleus | 42.79 | 43.38 |
| CDY56935 | Canola | nucleus | 39.64 | 43.14 |
| CDY42874 | Canola | nucleus | 42.79 | 41.67 |
| CDY51028 | Canola | nucleus | 42.34 | 40.69 |
| Bra010465.1-P | Field mustard | nucleus | 34.23 | 40.64 |
| CDY51029 | Canola | nucleus | 32.88 | 40.33 |
| Bra035907.1-P | Field mustard | nucleus | 46.85 | 38.24 |
| Solyc10g017630.1.1 | Tomato | nucleus | 28.83 | 36.78 |
| Solyc01g092950.2.1 | Tomato | extracellular | 30.18 | 32.37 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | UniProt:K4BEA6 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | EnsemblPlantsGene:Solyc03g006830.2 | EnsemblPlants:Solyc03g006830.2.1 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0002767B90 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:1331841..1343493
Molecular Weight (calculated)
25370.6 Da
IEP (calculated)
9.456
GRAVY (calculated)
-0.671
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRIENSTSR QVTFSKRRNG LTKKAYELSV LCDAEVAFII FSHKGRLYEF ASSNMQKIIE RYRGRARETT TVDKSTELEH YMENLKHETA NMAKKIEILE
101: ISKRKLMGQG LGSCSMDELE DIDSQLERTL KIIRARKTQL FKEEIESLKA KERLLLQQNA SLREKCGLRP MLSESASAPE PIPAPPSTPP AQSKERGNCS
201: QSTKSWEVET ELFIGLPQTR CL
101: ISKRKLMGQG LGSCSMDELE DIDSQLERTL KIIRARKTQL FKEEIESLKA KERLLLQQNA SLREKCGLRP MLSESASAPE PIPAPPSTPP AQSKERGNCS
201: QSTKSWEVET ELFIGLPQTR CL
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.