Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000030 | Potato | nucleus | 40.1 | 70.34 |
| Solyc10g017630.1.1 | Tomato | nucleus | 38.65 | 45.98 |
| CDY41269 | Canola | nucleus | 33.33 | 40.59 |
| CDY10828 | Canola | nucleus | 32.85 | 40.0 |
| VIT_16s0022g02380.t01 | Wine grape | nucleus | 36.72 | 35.85 |
| CDX94141 | Canola | nucleus | 19.32 | 33.06 |
| Solyc03g006830.2.1 | Tomato | nucleus | 32.37 | 30.18 |
| Solyc12g056460.1.1 | Tomato | nucleus | 28.99 | 29.13 |
| Solyc08g080100.2.1 | Tomato | nucleus | 28.5 | 26.34 |
| Solyc06g035570.1.1 | Tomato | nucleus | 1.93 | 7.41 |
| Solyc10g017640.1.1 | Tomato | nucleus | 1.93 | 6.56 |
Protein Annotations
| MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | UniProt:K4AZD6 | PFAM:PF01486 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF349 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc01g092950.2 | EnsemblPlants:Solyc01g092950.2.1 | InterPro:TF_Kbox |
| TMHMM:TMhelix | UniParc:UPI00027685BF | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:+:85495658..85497854
Molecular Weight (calculated)
24036.9 Da
IEP (calculated)
6.534
GRAVY (calculated)
-0.651
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASCQVIVL VDFMIYISSW AVPIMNNTLK ESFGQTTIYF LIPEVIERYK RHTKDKVKSD ENQSVDIQHT KQETASLMKK IELLESSKRK LLGEGLGSCS
101: LEEVQQLEKQ LEQSVITIRA RKMQVFREQM ERLKERERAL TAENMMLREL KFGGDEERRK SSGEKEREVV FCIEGGSTGS EKSDVETELF IGQPHYHDSR
201: IRRPEWS
101: LEEVQQLEKQ LEQSVITIRA RKMQVFREQM ERLKERERAL TAENMMLREL KFGGDEERRK SSGEKEREVV FCIEGGSTGS EKSDVETELF IGQPHYHDSR
201: IRRPEWS
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.