CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68007	Canola	nucleus	77.69	62.67
CDY41269	Canola	nucleus	60.33	42.94
CDY10828	Canola	nucleus	59.5	42.35
CDX98780	Canola	nucleus	69.42	38.36
CDX76346	Canola	nucleus	58.68	32.13
CDY55821	Canola	nucleus	58.68	32.13
CDX86738	Canola	nucleus	52.89	29.09
CDY13289	Canola	nucleus	50.41	28.11
PGSC0003DMT400000030	Potato	nucleus	23.14	23.73
Solyc10g017630.1.1	Tomato	nucleus	32.23	22.41
CDY27368	Canola	nucleus	38.84	22.07
CDY37054	Canola	nucleus	38.02	21.6
CDY69077	Canola	nucleus	37.19	21.13
CDX74755	Canola	nucleus	37.19	21.13
CDY53886	Canola	nucleus	35.54	20.19
CDY60689	Canola	nucleus	34.71	19.72
CDY30701	Canola	nucleus	33.88	19.62
Solyc01g092950.2.1	Tomato	extracellular	33.06	19.32
CDY16792	Canola	nucleus	29.75	18.65
CDY68754	Canola	nucleus	28.1	17.71
CDY38881	Canola	nucleus	28.1	16.67
CDY51029	Canola	nucleus	23.97	16.02
CDY38882	Canola	nucleus	28.93	15.98
VIT_16s0022g02380.t01	Wine grape	nucleus	27.27	15.57
CDY32613	Canola	nucleus	28.1	15.53
CDY00505	Canola	nucleus	27.27	15.14
CDY51028	Canola	nucleus	28.1	14.72
CDY52354	Canola	nucleus	23.97	13.24
CDX94444	Canola	nucleus	23.97	13.24
CDY55721	Canola	nucleus	23.97	13.18
CDY66015	Canola	nucleus	23.14	12.79
CDY32614	Canola	nucleus	11.57	12.61
CDY42874	Canola	nucleus	23.14	12.28
CDY56935	Canola	nucleus	20.66	12.25
CDY02145	Canola	nucleus	20.66	11.85
CDY41268	Canola	nucleus	5.79	10.14
CDY10829	Canola	nucleus	5.79	10.14
CDY00504	Canola	nucleus	4.96	9.84

Protein Annotations

MapMan:35.1	GO:A0A078DY52	EnsemblPlants:CDX94141	ProteinID:CDX94141	ProteinID:CDX94141.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00157060001	InterPro:IPR002487	PFAM:PF01486	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF349
InterPro:TF_Kbox	UniParc:UPI0004EDB122	SEG:seg	:	:	:

Description

BnaC07g37750D

Coordinates

chrLK031879:-:921447..925004

Molecular Weight (calculated)

14271.4 Da

IEP (calculated)

10.131

GRAVY (calculated)

-0.484

Length

121 amino acids

Sequence
(BLAST)

001: MSEKNWQPTE MLVAYILIPH LRFFDLHLTI FSIAKTIERY QKRVKETGIN HTRDNNSQQA RDETYGLTKK IEQLEISKRK LLGKGIVACS IEELQQLENQ
101: LERGLSRIRA KKVFFFYINT A

Best Arabidopsis Sequence Match ( AT4G22950.2 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKV QF

Arabidopsis Description

AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.