Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029281.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| AT5G62165.2 | Thale cress | nucleus | 86.12 | 85.71 |
| CDY16792 | Canola | nucleus | 78.95 | 85.49 |
| Solyc06g035570.1.1 | Tomato | nucleus | 21.05 | 81.48 |
| CDY00504 | Canola | nucleus | 22.49 | 77.05 |
| CDY41268 | Canola | nucleus | 23.92 | 72.46 |
| CDY10829 | Canola | nucleus | 23.92 | 72.46 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 26.79 | 70.89 |
| CDY68754 | Canola | nucleus | 54.55 | 59.38 |
| Os03t0834466-00 | Rice | nucleus | 18.18 | 58.46 |
| CDY68007 | Canola | nucleus | 41.15 | 57.33 |
| CDY32614 | Canola | nucleus | 29.19 | 54.95 |
| CDY27368 | Canola | nucleus | 55.02 | 53.99 |
| CDY37054 | Canola | nucleus | 55.02 | 53.99 |
| CDY38881 | Canola | nucleus | 52.63 | 53.92 |
| PGSC0003DMT400065060 | Potato | nucleus | 28.23 | 53.15 |
| CDY69077 | Canola | nucleus | 54.07 | 53.05 |
| CDX74755 | Canola | nucleus | 53.59 | 52.58 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 17.7 | 52.11 |
| CDY53886 | Canola | nucleus | 53.11 | 52.11 |
| CDY60689 | Canola | nucleus | 53.11 | 52.11 |
| CDY32613 | Canola | nucleus | 54.55 | 52.05 |
| KRH35396 | Soybean | nucleus | 53.11 | 51.87 |
| CDY38882 | Canola | nucleus | 54.07 | 51.6 |
| GSMUA_Achr10P... | Banana | nucleus | 49.76 | 51.49 |
| KRG91427 | Soybean | nucleus | 52.63 | 51.4 |
| CDY13289 | Canola | nucleus | 52.15 | 50.23 |
| GSMUA_Achr11P... | Banana | nucleus | 49.76 | 50.0 |
| CDY55721 | Canola | nucleus | 52.63 | 50.0 |
| CDY00505 | Canola | nucleus | 52.15 | 50.0 |
| CDX86738 | Canola | nucleus | 52.63 | 50.0 |
| CDX98780 | Canola | nucleus | 52.15 | 49.77 |
| CDX94444 | Canola | nucleus | 52.15 | 49.77 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 50.72 | 49.77 |
| PGSC0003DMT400062319 | Potato | nucleus | 28.23 | 49.58 |
| CDY02145 | Canola | nucleus | 49.76 | 49.29 |
| CDY56935 | Canola | nucleus | 47.85 | 49.02 |
| CDY52354 | Canola | nucleus | 51.2 | 48.86 |
| Solyc03g006830.2.1 | Tomato | nucleus | 51.2 | 48.2 |
| CDY66015 | Canola | nucleus | 50.24 | 47.95 |
| CDY51028 | Canola | nucleus | 51.2 | 46.32 |
| CDY55821 | Canola | nucleus | 48.8 | 46.15 |
| CDX76346 | Canola | nucleus | 48.8 | 46.15 |
| CDY42874 | Canola | nucleus | 49.28 | 45.18 |
| CDY51029 | Canola | nucleus | 38.28 | 44.2 |
| CDY41269 | Canola | nucleus | 29.67 | 36.47 |
| CDY10828 | Canola | nucleus | 29.19 | 35.88 |
| CDX94141 | Canola | nucleus | 19.62 | 33.88 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GYX1 | UniProt:A0A078GYX1 | EnsemblPlants:CDY30701 | ProteinID:CDY30701 |
| ProteinID:CDY30701.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00046036001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002545BB3 | SEG:seg |
Description
BnaA02g33230DBnaA02g33230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYX1]
Coordinates
chrLK032258:+:113381..116231
Molecular Weight (calculated)
24745.9 Da
IEP (calculated)
9.706
GRAVY (calculated)
-0.761
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIVFSQ RGRLYEFSNS DMWKTIERYR KYTKDHETNN HDSEIYVQRL KEEASHMITK
101: IELLEFHKRK LLGQELASCS LEELQEIDSQ LQRSLAKVRA KKAQLFREQL EKLKAKEKQL LEENVRLHQK TVLEPWRGST DQQEKFRVID LNLEVETDLV
201: IGLPEKHCK
101: IELLEFHKRK LLGQELASCS LEELQEIDSQ LQRSLAKVRA KKAQLFREQL EKLKAKEKQL LEENVRLHQK TVLEPWRGST DQQEKFRVID LNLEVETDLV
201: IGLPEKHCK
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.