Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029154.1-P | Field mustard | nucleus | 99.54 | 99.54 |
| CDY32613 | Canola | nucleus | 98.17 | 98.17 |
| CDY00504 | Canola | nucleus | 24.2 | 86.89 |
| CDY00505 | Canola | nucleus | 76.26 | 76.61 |
| CDY51029 | Canola | nucleus | 63.01 | 76.24 |
| Solyc06g035570.1.1 | Tomato | nucleus | 18.26 | 74.07 |
| AT5G51870.3 | Thale cress | nucleus | 73.97 | 70.74 |
| CDY41268 | Canola | nucleus | 21.92 | 69.57 |
| CDY10829 | Canola | nucleus | 21.92 | 69.57 |
| CDY68754 | Canola | nucleus | 57.08 | 65.1 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 23.29 | 64.56 |
| CDY38881 | Canola | nucleus | 57.99 | 62.25 |
| CDY32614 | Canola | nucleus | 28.77 | 56.76 |
| CDY30701 | Canola | nucleus | 51.6 | 54.07 |
| CDY52354 | Canola | nucleus | 53.88 | 53.88 |
| CDY56935 | Canola | nucleus | 49.77 | 53.43 |
| CDY02145 | Canola | nucleus | 51.14 | 53.08 |
| CDY66015 | Canola | nucleus | 52.97 | 52.97 |
| CDY16792 | Canola | nucleus | 46.58 | 52.85 |
| CDX94444 | Canola | nucleus | 52.05 | 52.05 |
| CDY51028 | Canola | nucleus | 54.79 | 51.95 |
| CDY55721 | Canola | nucleus | 52.05 | 51.82 |
| CDY42874 | Canola | nucleus | 53.88 | 51.75 |
| Os03t0834466-00 | Rice | nucleus | 15.07 | 50.77 |
| CDY68007 | Canola | nucleus | 34.7 | 50.67 |
| GSMUA_Achr10P... | Banana | nucleus | 46.12 | 50.0 |
| CDY27368 | Canola | nucleus | 48.4 | 49.77 |
| PGSC0003DMT400062319 | Potato | nucleus | 26.94 | 49.58 |
| CDY37054 | Canola | nucleus | 47.95 | 49.3 |
| CDY69077 | Canola | nucleus | 47.03 | 48.36 |
| CDX74755 | Canola | nucleus | 47.03 | 48.36 |
| GSMUA_Achr11P... | Banana | nucleus | 45.66 | 48.08 |
| Solyc03g006830.2.1 | Tomato | nucleus | 47.95 | 47.3 |
| PGSC0003DMT400065060 | Potato | nucleus | 23.74 | 46.85 |
| CDY60689 | Canola | nucleus | 45.21 | 46.48 |
| CDY53886 | Canola | nucleus | 45.21 | 46.48 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 44.29 | 45.54 |
| CDY13289 | Canola | nucleus | 44.75 | 45.16 |
| KRG91427 | Soybean | nucleus | 43.84 | 44.86 |
| KRH35396 | Soybean | nucleus | 43.84 | 44.86 |
| CDX86738 | Canola | nucleus | 44.75 | 44.55 |
| CDX98780 | Canola | nucleus | 44.29 | 44.29 |
| CDY55821 | Canola | nucleus | 44.29 | 43.89 |
| CDX76346 | Canola | nucleus | 44.29 | 43.89 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 14.16 | 43.66 |
| CDY41269 | Canola | nucleus | 24.2 | 31.18 |
| CDY10828 | Canola | nucleus | 23.74 | 30.59 |
| CDX94141 | Canola | nucleus | 15.98 | 28.93 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HLV8 | UniProt:A0A078HLV8 | EnsemblPlants:CDY38882 | ProteinID:CDY38882 |
| ProteinID:CDY38882.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00066728001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF0838 | SEG:seg | : |
Description
BnaA03g12970DBnaA03g12970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLV8]
Coordinates
chrLK032434:-:177330..180163
Molecular Weight (calculated)
25488.3 Da
IEP (calculated)
10.013
GRAVY (calculated)
-0.488
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIEIKK IENRTSRQIT FSKRRNGLFK KAHELSVLCD AQVAAIVFSQ SGRLYEFSSS EMEKTIERYV KFSPDYFVPG RPQVELYLLE LKKEMDIMVK
101: KIDLLEVHQR KLMGQGLGSC SLAQLQGLET QIEKSLRIIR SRKAELYADQ LLKLKEKERE LLDQRRRLRE EEIRETLVRP MLPVTLHTGK DETGSACRMS
201: KHSSEVETDL FIGFPVTRL
101: KIDLLEVHQR KLMGQGLGSC SLAQLQGLET QIEKSLRIIR SRKAELYADQ LLKLKEKERE LLDQRRRLRE EEIRETLVRP MLPVTLHTGK DETGSACRMS
201: KHSSEVETDL FIGFPVTRL
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS QMEKIIDRYG KFSNAFYVAE RPQVERYLQE LKMEIDRMVK
101: KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLLE EQNRERLMRP VVPATLQICD KGNTEGGHRT
201: KHSSEVETDL FIGLPVTRL
101: KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLLE EQNRERLMRP VVPATLQICD KGNTEGGHRT
201: KHSSEVETDL FIGLPVTRL
Arabidopsis Description
AGL71AGAMOUS-like 71 [Source:TAIR;Acc:AT5G51870]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.