Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g035570.1.1 | Tomato | nucleus | 46.85 | 96.3 |
| CDY00504 | Canola | nucleus | 42.34 | 77.05 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 51.35 | 72.15 |
| PGSC0003DMT400062319 | Potato | nucleus | 46.85 | 43.7 |
| CDY32614 | Canola | nucleus | 43.24 | 43.24 |
| CDY16792 | Canola | nucleus | 51.35 | 29.53 |
| AT5G62165.2 | Thale cress | nucleus | 54.95 | 29.05 |
| CDY30701 | Canola | nucleus | 53.15 | 28.23 |
| Bra029281.1-P | Field mustard | nucleus | 53.15 | 28.23 |
| Bra029314.1-P | Field mustard | nucleus | 46.85 | 27.81 |
| Bra010465.1-P | Field mustard | nucleus | 46.85 | 27.81 |
| Bra013891.1-P | Field mustard | nucleus | 46.85 | 27.51 |
| CDY68754 | Canola | nucleus | 46.85 | 27.08 |
| Bra028283.1-P | Field mustard | nucleus | 47.75 | 26.63 |
| GSMUA_Achr11P... | Banana | nucleus | 49.55 | 26.44 |
| GSMUA_Achr10P... | Banana | nucleus | 47.75 | 26.24 |
| CDY56935 | Canola | nucleus | 47.75 | 25.98 |
| Bra028282.1-P | Field mustard | nucleus | 46.85 | 25.74 |
| CDY02145 | Canola | nucleus | 47.75 | 25.12 |
| AT5G51860.1 | Thale cress | nucleus | 47.75 | 25.12 |
| Bra012957.1-P | Field mustard | nucleus | 47.75 | 25.12 |
| CDY38881 | Canola | nucleus | 45.95 | 25.0 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 47.75 | 24.88 |
| Bra029155.1-P | Field mustard | nucleus | 45.95 | 24.4 |
| CDY00505 | Canola | nucleus | 47.75 | 24.31 |
| PGSC0003DMT400026576 | Potato | nucleus | 46.85 | 24.3 |
| Bra029154.1-P | Field mustard | nucleus | 47.75 | 24.2 |
| CDY66015 | Canola | nucleus | 47.75 | 24.2 |
| CDY38882 | Canola | nucleus | 46.85 | 23.74 |
| CDY52354 | Canola | nucleus | 46.85 | 23.74 |
| CDY32613 | Canola | nucleus | 46.85 | 23.74 |
| CDX94444 | Canola | nucleus | 46.85 | 23.74 |
| CDY55721 | Canola | nucleus | 46.85 | 23.64 |
| KRH35396 | Soybean | nucleus | 45.05 | 23.36 |
| PGSC0003DMT400058560 | Potato | nucleus | 46.85 | 23.21 |
| CDY42874 | Canola | nucleus | 46.85 | 22.81 |
| KRG91427 | Soybean | nucleus | 43.24 | 22.43 |
| AT5G51870.3 | Thale cress | nucleus | 45.95 | 22.27 |
| PGSC0003DMT400000028 | Potato | nucleus | 44.14 | 21.88 |
| CDY51028 | Canola | nucleus | 45.05 | 21.64 |
| Bra035907.1-P | Field mustard | nucleus | 51.35 | 20.96 |
| CDY51029 | Canola | nucleus | 20.72 | 12.71 |
| PGSC0003DMT400062322 | Potato | nucleus | 5.41 | 4.72 |
| PGSC0003DMT400000030 | Potato | nucleus | 4.5 | 4.24 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1CDC0 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG400025279 | PGSC:PGSC0003DMG400025279 | EnsemblPlants:PGSC0003DMT400065060 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000294F584 | : | : | : |
Description
MADS-box transcription factor FBP22 [Source:PGSC_GENE;Acc:PGSC0003DMG400025279]
Coordinates
chr6:-:36656761..36660368
Molecular Weight (calculated)
12449.2 Da
IEP (calculated)
10.852
GRAVY (calculated)
-0.161
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MINVYFKIDY QNKEMVRGKV EMKRIENATS RQVTFSKRRN GVMKKAYELS VLCDAQVALI IFSQKGRLFQ FSSSRPRTVG LSVSRDLADI SELGWGGVAV
101: VNHGPPARAV V
101: VNHGPPARAV V
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKVHILHHYL IGI
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKVHILHHYL IGI
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.