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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400000028
PGSC0003DMT400000383
PGSC0003DMT400001225
PGSC0003DMT400003483
PGSC0003DMT400004094
PGSC0003DMT400010451
PGSC0003DMT400011576
PGSC0003DMT400012096
PGSC0003DMT400012230
PGSC0003DMT400015077
PGSC0003DMT400018358
PGSC0003DMT400024247
PGSC0003DMT400026576
PGSC0003DMT400043358
PGSC0003DMT400048352
PGSC0003DMT400048353
PGSC0003DMT400050482
PGSC0003DMT400052805
PGSC0003DMT400063313
PGSC0003DMT400068352
PGSC0003DMT400072888
PGSC0003DMT400072891

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G45660.1 PGSC0003DMT400072888 AT1G26310.1 11439126
AT2G45660.1 PGSC0003DMT400072888 AT1G26310.1 15805477
AT2G45660.1 PGSC0003DMT400072888 AT1G69120.1 11439126
AT2G45660.1 PGSC0003DMT400072888 AT1G69120.1 15805477
AT2G45660.1 PGSC0003DMT400072888 AT1G69120.1 21798944
AT2G45660.1 PGSC0003DMT400048352 AT1G71692.1 15805477
AT2G45660.1 PGSC0003DMT400048353 AT1G71692.1 15805477
AT2G45660.1 PGSC0003DMT400072891 AT2G03710.1 15805477
AT2G45660.1 PGSC0003DMT400004094 AT2G18040.1 20129060
AT2G45660.1 PGSC0003DMT400000383 AT2G45650.1 15805477
AT2G45660.1 PGSC0003DMT400000028 AT2G45660.1 15805477
AT2G45660.1 PGSC0003DMT400026576 AT2G45660.1 15805477
AT2G45660.1 PGSC0003DMT400003483 AT3G02310.1 15805477
AT2G45660.1 PGSC0003DMT400043358 AT3G54220.1 19228333
AT2G45660.1 PGSC0003DMT400000383 AT3G61120.1 15805477
AT2G45660.1 PGSC0003DMT400024247 AT4G24540.1 15805477
AT2G45660.1 PGSC0003DMT400001225 AT5G04600.1 21798944
AT2G45660.1 PGSC0003DMT400018358 AT5G04600.1 21798944
AT2G45660.1 PGSC0003DMT400015077 AT5G22290.1 21798944
AT2G45660.1 PGSC0003DMT400050482 AT5G22290.1 21798944
AT2G45660.1 PGSC0003DMT400011576 AT5G47100.1 21798944
AT2G45660.1 PGSC0003DMT400052805 AT5G47100.1 21798944
AT2G45660.1 PGSC0003DMT400068352 AT5G47100.1 21798944
AT2G45660.1 PGSC0003DMT400012096 AT5G47570.1 21798944
AT2G45660.1 PGSC0003DMT400012230 AT5G47570.1 21798944
AT2G45660.1 PGSC0003DMT400010451 AT5G60910.1 15805477
AT2G45660.1 PGSC0003DMT400063313 AT5G60910.1 15805477
AT2G45660.1 PGSC0003DMT400010451 AT5G60910.1 21798944
AT2G45660.1 PGSC0003DMT400063313 AT5G60910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g017640.1.1 Tomato nucleus 27.1 95.08
TraesCS1B01G214600.1 Wheat nucleus 23.36 80.65
Zm00001d047355_P001 Maize nucleus 25.7 73.33
KRH00625 Soybean nucleus 63.08 64.59
KRH40554 Soybean nucleus 62.15 63.03
Bra004928.1-P Field mustard nucleus 60.75 61.03
CDX74755 Canola nucleus 60.75 61.03
CDY69077 Canola nucleus 60.75 61.03
PGSC0003DMT400000028 Potato nucleus 63.55 60.71
Bra039324.1-P Field mustard nucleus 60.28 60.56
CDY37054 Canola nucleus 60.28 60.56
Bra000393.1-P Field mustard nucleus 59.81 60.09
CDY27368 Canola nucleus 59.81 60.09
CDY53886 Canola nucleus 59.81 60.09
AT2G45660.1 Thale cress nucleus 59.81 59.81
GSMUA_Achr2P11820_001 Banana nucleus 37.85 58.27
CDY60689 Canola nucleus 57.48 57.75
TraesCS7D01G037000.1 Wheat cytosol 16.36 57.38
Zm00001d042315_P001 Maize nucleus 18.69 57.14
PGSC0003DMT400000030 Potato nucleus 29.91 54.24
GSMUA_Achr1P03630_001 Banana nucleus 50.47 51.18
GSMUA_Achr5P10250_001 Banana nucleus 51.4 50.93
PGSC0003DMT400058560 Potato nucleus 53.27 50.89
HORVU1Hr1G051660.10 Barley nucleus 34.58 48.05
Os03t0122600-01 Rice nucleus 51.4 47.83
TraesCS1B01G214500.1 Wheat nucleus 48.6 47.71
KRH65189 Soybean nucleus 52.8 47.68
PGSC0003DMT400065060 Potato nucleus 24.3 46.85
Zm00001d048474_P001 Maize nucleus 50.47 46.55
Zm00001d027425_P001 Maize nucleus 49.53 46.49
OQU93352 Sorghum nucleus 50.47 46.35
PGSC0003DMT400062319 Potato nucleus 25.7 46.22
TraesCS1D01G203400.1 Wheat nucleus 49.53 45.89
TraesCS1D01G203300.2 Wheat nucleus 49.07 45.65
TraesCS1A01G199900.1 Wheat nucleus 48.6 45.61
KXG39016 Sorghum nucleus 48.13 45.58
TraesCS4B01G346700.1 Wheat nucleus 47.2 45.5
TraesCS4D01G341700.1 Wheat nucleus 47.2 45.5
TraesCS5A01G515500.1 Wheat nucleus 46.73 45.45
TraesCS1A01G199600.2 Wheat nucleus 47.66 44.35
Os10t0536100-01 Rice nucleus 47.66 43.78
Zm00001d031625_P001 Maize nucleus 16.36 43.75
HORVU4Hr1G085450.1 Barley nucleus 18.69 41.24
HORVU6Hr1G002270.1 Barley mitochondrion, nucleus 20.56 41.12
TraesCS3A01G434700.1 Wheat nucleus 19.16 40.2
Os06t0108500-01 Rice nucleus 39.72 39.91
HORVU3Hr1G095080.3 Barley plastid 20.56 37.93
PGSC0003DMT400062322 Potato nucleus 22.43 37.8
TraesCS6D01G014600.1 Wheat nucleus 45.33 37.45
TraesCS6B01G017900.1 Wheat nucleus 44.86 37.21
TraesCS6A01G011700.1 Wheat nucleus 44.86 36.64
HORVU6Hr1G002330.14 Barley nucleus 31.78 35.42
HORVU3Hr1G095200.4 Barley nucleus 27.1 34.73
TraesCS3B01G469700.1 Wheat nucleus 26.64 34.13
HORVU3Hr1G095240.2 Barley nucleus 25.23 33.96
TraesCS3D01G427900.1 Wheat nucleus 26.17 33.53
TraesCS3D01G428000.1 Wheat nucleus 24.77 33.33
TraesCS3A01G434900.1 Wheat nucleus 25.7 32.93
TraesCS3A01G434400.1 Wheat nucleus 25.7 32.93
TraesCS3A01G435000.1 Wheat nucleus 25.23 32.34
TraesCS3B01G470000.1 Wheat nucleus 25.23 32.34
EES01980 Sorghum nucleus 24.3 31.9
HORVU4Hr1G085370.1 Barley nucleus 15.89 31.48
TraesCS3D01G427700.1 Wheat mitochondrion, nucleus 24.3 31.33
TraesCS3A01G432900.1 Wheat mitochondrion, nucleus 24.3 31.33
Os08t0531900-01 Rice nucleus 26.64 31.15
TraesCS4B01G351500.1 Wheat nucleus 23.83 31.1
Zm00001d039913_P002 Maize nucleus 25.23 31.03
OQU86329 Sorghum nucleus 24.77 30.99
Os01t0922800-01 Rice nucleus 23.36 30.49
Zm00001d047356_P002 Maize nucleus 16.82 30.25
HORVU7Hr1G054390.1 Barley nucleus 21.5 29.87
HORVU7Hr1G054320.2 Barley nucleus 26.17 28.87
TraesCS7A01G260900.1 Wheat nucleus 25.23 26.34
TraesCS7B01G158900.1 Wheat nucleus 26.64 26.27
TraesCS7D01G261900.1 Wheat nucleus 26.64 26.03
TraesCS5A01G520200.1 Wheat nucleus, plastid 23.83 25.25
TraesCS4D01G346300.1 Wheat nucleus 24.3 25.12
KXG25532 Sorghum nucleus, plastid 24.77 21.12
HORVU3Hr1G095090.1 Barley cytosol, mitochondrion, nucleus 25.7 16.32
Protein Annotations
EntrezGene:102579699MapMan:15.5.14Gene3D:3.40.1810.10ncoils:CoilGO:GO:0000977GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983
InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879UniProt:M1AND5InterPro:MADS_MEF2-likePFAM:PF00319
PFAM:PF01486EnsemblPlantsGene:PGSC0003DMG400010263PGSC:PGSC0003DMG400010263EnsemblPlants:PGSC0003DMT400026576PRINTS:PR00404ScanProsite:PS00350
PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF341SMART:SM00432SUPFAM:SSF55455
InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI0002951D4BRefSeq:XP_006341728.1RefSeq:XP_015161756.1
SEG:seg:::::
Description
MADS-box transcription factor FBP28 [Source:PGSC_GENE;Acc:PGSC0003DMG400010263]
Coordinates
chr10:+:38698247..38706939
Molecular Weight (calculated)
24861.2 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.641
Length
214 amino acids
Sequence
(BLAST)
001: MVRGKTEMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVGLIIFSP RDKLYEFSTS SMQEIIERYQ RHTKDIQCEN PDMEQNNMHN LKHNTSSLMK
101: KIELLEKSKR KLLGESLESC SLEELQQMEH QLERSINIIR ARKMEVFREQ IVRLKENVKE LSSENVMLLE KCGGLEMQQT SGGEDVSIVI SSEKSYVETE
201: LFIGLPESCK TKRP
Best Arabidopsis Sequence Match ( AT2G45660.1 )
(BLAST)
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.