Factsheet for PGSC0003DMT400048353

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000028
PGSC0003DMT400026576

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT1G71692.1	PGSC0003DMT400026576	AT2G45660.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016129.1-P	Field mustard	nucleus	52.44	45.74
Solyc11g032100.1.1	Tomato	nucleus	82.93	33.83
VIT_18s0041g02140.t01	Wine grape	nucleus	67.07	27.78
KRH39983	Soybean	nucleus	54.88	22.17
KRH23802	Soybean	nucleus	54.88	22.06
CDX72816	Canola	mitochondrion, nucleus	53.66	21.78
Os12t0206800-00	Rice	nucleus	51.22	20.79
Bra003919.1-P	Field mustard	nucleus	53.66	20.75
CDY03698	Canola	mitochondrion, nucleus	52.44	20.38
Bra007972.1-P	Field mustard	nucleus	52.44	20.38
Os08t0112700-01	Rice	nucleus	54.88	20.27
CDX96334	Canola	nucleus	52.44	20.19
CDY37947	Canola	nucleus	51.22	19.91
AT1G71692.1	Thale cress	nucleus	51.22	19.91
GSMUA_Achr7P02960_001	Banana	nucleus	57.32	19.83
EES13239	Sorghum	mitochondrion, nucleus	53.66	19.82
GSMUA_Achr11P...	Banana	nucleus	51.22	18.75
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	52.44	18.7
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	52.44	18.53
OQU78925	Sorghum	nucleus	48.78	18.52
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	51.22	18.34
Zm00001d035053_P002	Maize	nucleus	40.24	16.84
TraesCS2A01G311100.1	Wheat	nucleus	41.46	16.83
TraesCS2D01G309300.1	Wheat	nucleus	41.46	16.83
Zm00001d025479_P001	Maize	nucleus	39.02	16.08
Zm00001d049692_P001	Maize	nucleus	51.22	15.97
KXG26379	Sorghum	nucleus	39.02	15.61
CDY36686	Canola	mitochondrion, nucleus	39.02	15.17
TraesCS1B01G467500.1	Wheat	nucleus	2.44	2.04
PGSC0003DMT400048352	Potato	nucleus	1.22	0.86
Bra016128.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR002487	UniProt:M1BMB3	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG402018787	PGSC:PGSC0003DMG402018787
EnsemblPlants:PGSC0003DMT400048353	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	InterPro:TF_Kbox	UniParc:UPI0002950046

Description

TAGL12 transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402018787]

Coordinates

chr11:+:17006051..17006864

Molecular Weight (calculated)

9878.9 Da

IEP (calculated)

4.399

GRAVY (calculated)

-0.399

Length

82 amino acids

Sequence
(BLAST)

1: MTLDELHSLE KYLEIWMYHI RSAKMDIMFQ EIQLLKNKEG ILEAANKYLQ DKIDEQYTVT NMTQNLTDFQ CPLTVQNEIF QF

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.