Factsheet for GSMUA_Achr7P02960_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P03630_001
GSMUA_Achr2P11820_001
GSMUA_Achr3P07310_001
GSMUA_Achr5P10250_001
GSMUA_Achr5P24560_001
GSMUA_Achr7P12610_001
GSMUA_Achr9P15540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	GSMUA_Achr1P03630_001	AT2G45660.1	15805477
AT1G71692.1	GSMUA_Achr2P11820_001	AT2G45660.1	15805477
AT1G71692.1	GSMUA_Achr5P10250_001	AT2G45660.1	15805477
AT1G71692.1	GSMUA_Achr3P07310_001	AT3G57230.1	15805477
AT1G71692.1	GSMUA_Achr5P24560_001	AT3G57230.1	15805477
AT1G71692.1	GSMUA_Achr7P12610_001	AT3G57230.1	15805477
AT1G71692.1	GSMUA_Achr9P15540_001	AT3G57230.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016128.1-P	Field mustard	nucleus	21.52	82.26
GSMUA_Achr11P...	Banana	nucleus	65.4	69.2
PGSC0003DMT400048352	Potato	nucleus	31.22	63.79
VIT_18s0041g02140.t01	Wine grape	nucleus	52.74	63.13
Solyc11g032100.1.1	Tomato	nucleus	52.74	62.19
KRH23802	Soybean	nucleus	50.21	58.33
EES13239	Sorghum	mitochondrion, nucleus	54.43	58.11
PGSC0003DMT400048353	Potato	nucleus	19.83	57.32
CDY37947	Canola	nucleus	50.63	56.87
AT1G71692.1	Thale cress	nucleus	50.63	56.87
CDY03698	Canola	mitochondrion, nucleus	50.63	56.87
Bra007972.1-P	Field mustard	nucleus	50.63	56.87
Os08t0112700-01	Rice	nucleus	53.16	56.76
KRH39983	Soybean	nucleus	48.52	56.65
Bra003919.1-P	Field mustard	nucleus	50.63	56.6
CDX72816	Canola	mitochondrion, nucleus	47.68	55.94
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	54.01	55.9
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	54.01	55.65
TraesCS7B01G220200.1	Wheat	mitochondrion, nucleus	53.59	55.46
CDX96334	Canola	nucleus	49.79	55.4
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	53.59	54.74
Zm00001d035053_P002	Maize	nucleus	43.46	52.55
CDY36686	Canola	mitochondrion, nucleus	45.15	50.71
Bra016129.1-P	Field mustard	nucleus	19.83	50.0
Zm00001d049692_P001	Maize	nucleus	50.21	45.25

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr7G02960_001
EnsemblPlants:GSMUA_Achr7P02960_001	EnsemblPlants:GSMUA_Achr7T02960_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0TE86
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295B284	:	:	:

Description

MADS-box transcription factor 26 [Source:GMGC_GENE;Acc:GSMUA_Achr7G02960_001]

Coordinates

chr7:+:2375951..2378832

Molecular Weight (calculated)

26637.6 Da

IEP (calculated)

7.325

GRAVY (calculated)

-0.210

Length

237 amino acids

Sequence
(BLAST)

001: MARGKVQLKR IENPVHRQVT FCKRRMSLLK KANELSVLCD AEIGIIIFST HGKLYELATK GTMEGLIDRY KTACGDAHST AGGGDANQSQ VILPPSLHEF
101: KQEISMLKKE IDLLHKSLRC MLGEGIAGHM TLDELLVLEK HLEMWMYHIR ATKMQIMFQE IQSLKNKEGI LKAANVFLQE KILEQNSLFD VSPMLVQQNG
201: HFDAGQMVAA DSPYPLTVQY EHSNLGGSDM GFSYLSQ

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.