Factsheet for Os08t0112700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0922800-01
Os02t0579600-00
Os02t0731200-01
Os03t0122600-01
Os04t0304400-01
Os06t0108500-01
Os06t0347700-00
Os08t0431900-00
Os08t0531900-01
Os10t0536100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	Os01t0922800-01	AT2G45660.1	15805477
AT1G71692.1	Os03t0122600-01	AT2G45660.1	15805477
AT1G71692.1	Os06t0108500-01	AT2G45660.1	15805477
AT1G71692.1	Os08t0531900-01	AT2G45660.1	15805477
AT1G71692.1	Os10t0536100-01	AT2G45660.1	15805477
AT1G71692.1	Os02t0579600-00	AT3G57230.1	15805477
AT1G71692.1	Os02t0731200-01	AT3G57230.1	15805477
AT1G71692.1	Os04t0304400-01	AT3G57230.1	15805477
AT1G71692.1	Os06t0347700-00	AT3G57230.1	15805477
AT1G71692.1	Os08t0431900-00	AT3G57230.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13239	Sorghum	mitochondrion, nucleus	87.39	87.39
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	90.09	86.96
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	89.64	86.9
TraesCS7B01G220200.1	Wheat	mitochondrion, nucleus	88.74	86.03
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	89.64	85.78
Bra016128.1-P	Field mustard	nucleus	20.72	74.19
Zm00001d035053_P002	Maize	nucleus	64.41	72.96
PGSC0003DMT400048352	Potato	nucleus	32.88	62.93
GSMUA_Achr11P...	Banana	nucleus	62.16	61.61
Zm00001d049692_P001	Maize	nucleus	72.07	60.84
VIT_18s0041g02140.t01	Wine grape	nucleus	53.6	60.1
Solyc11g032100.1.1	Tomato	nucleus	54.05	59.7
KRH23802	Soybean	nucleus	52.25	56.86
KRH39983	Soybean	nucleus	51.8	56.65
PGSC0003DMT400048353	Potato	nucleus	20.27	54.88
Os12t0206800-00	Rice	nucleus	48.65	53.47
GSMUA_Achr7P02960_001	Banana	nucleus	56.76	53.16
AT1G71692.1	Thale cress	nucleus	49.1	51.66
CDX72816	Canola	mitochondrion, nucleus	46.85	51.49
CDY03698	Canola	mitochondrion, nucleus	48.65	51.18
Bra007972.1-P	Field mustard	nucleus	48.65	51.18
CDY37947	Canola	nucleus	48.2	50.71
Bra003919.1-P	Field mustard	nucleus	47.75	50.0
CDX96334	Canola	nucleus	47.75	49.77
CDY36686	Canola	mitochondrion, nucleus	42.79	45.02
Bra016129.1-P	Field mustard	nucleus	17.57	41.49

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4344493	EMBL:AB003326	EMBL:AK069122	EMBL:AY551925
ProteinID:BAD09511.1	ProteinID:BAF22747.1	ProteinID:BAT03519.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os08g0112700	EnsemblPlants:Os08t0112700-01	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF152	UniProt:Q0J8G8	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00000A0B6C	RefSeq:XP_015650791.1	:	:	:

Description

MADS BOX GENE 26MADS-box transcription factor, Regulator of both biotic and abiotic stress responses (Os08t0112700-01)

Coordinates

chr8:+:679358..681703

Molecular Weight (calculated)

25218.8 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.314

Length

222 amino acids

Sequence
(BLAST)

001: MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN
101: LLQKGLRYIY GNRANEHMTV EELNALERYL EIWMYNIRSA KMQIMIQEIQ ALKSKEGMLK AANEILQEKI VEQNGLIDVG MMVADQQNGH FSTVPLLEEI
201: TNPLTILSGY STCRGSEMGY SF

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.