Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047355_P001 | Maize | nucleus | 25.75 | 80.0 |
| Solyc10g017640.1.1 | Tomato | nucleus | 19.74 | 75.41 |
| TraesCS1B01G214500.1 | Wheat | nucleus | 67.38 | 72.02 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 69.53 | 70.43 |
| KRH48297 | Soybean | nucleus | 26.61 | 69.66 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 67.38 | 68.26 |
| TraesCS1A01G199900.1 | Wheat | nucleus | 66.52 | 67.98 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 67.38 | 67.97 |
| KXG39016 | Sorghum | nucleus | 65.67 | 67.7 |
| Os03t0122600-01 | Rice | nucleus | 61.8 | 62.61 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 40.77 | 61.69 |
| Os03t0834466-00 | Rice | nucleus | 15.88 | 56.92 |
| Zm00001d047356_P002 | Maize | nucleus | 27.47 | 53.78 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 15.45 | 50.7 |
| Bra039324.1-P | Field mustard | nucleus | 46.35 | 50.7 |
| CDY37054 | Canola | nucleus | 46.35 | 50.7 |
| AT2G45660.1 | Thale cress | nucleus | 46.35 | 50.47 |
| KRH00625 | Soybean | nucleus | 45.06 | 50.24 |
| Bra000393.1-P | Field mustard | nucleus | 45.49 | 49.77 |
| Bra004928.1-P | Field mustard | nucleus | 45.49 | 49.77 |
| CDY69077 | Canola | nucleus | 45.49 | 49.77 |
| CDX74755 | Canola | nucleus | 45.49 | 49.77 |
| CDY27368 | Canola | nucleus | 45.49 | 49.77 |
| KRH40554 | Soybean | nucleus | 45.06 | 49.76 |
| CDY53886 | Canola | nucleus | 45.06 | 49.3 |
| PGSC0003DMT400000028 | Potato | nucleus | 46.78 | 48.66 |
| CDY60689 | Canola | nucleus | 44.21 | 48.36 |
| PGSC0003DMT400026576 | Potato | nucleus | 43.78 | 47.66 |
| Os06t0108500-01 | Rice | nucleus | 41.2 | 45.07 |
| KRH65189 | Soybean | nucleus | 42.49 | 41.77 |
| Os08t0531900-01 | Rice | nucleus | 28.76 | 36.61 |
| Os01t0922800-01 | Rice | nucleus | 25.75 | 36.59 |
| KRH48299 | Soybean | nucleus | 19.31 | 32.85 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4349237 | ProteinID:AAL58115.1 | ProteinID:AAP54810.1 | ProteinID:ABG66221.1 |
| EMBL:AK070135 | EMBL:AY345224 | EMBL:AY551919 | ProteinID:BAF27082.1 | ProteinID:BAT11822.1 | ncoils:Coil |
| ProteinID:EEE51318.1 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os10g0536100 | EnsemblPlants:Os10t0536100-01 | UniProt:P0C5B2 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A287A |
| RefSeq:XP_015614799.1 | : | : | : | : | : |
Description
MADS BOX GENE 56Similar to MADS-box transcription factor 56. (Os10t0536100-01)
Coordinates
chr10:+:20863187..20873635
Molecular Weight (calculated)
26306.6 Da
IEP (calculated)
10.027
GRAVY (calculated)
-0.656
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGRTELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGRLYEFASA PSLQKTIDRY KAYTKDHVNN KTIQQDIQQV KDDTLGLAKK
101: LEALDESRRK ILGENLEGFS IEELRGLEMK LEKSLHKIRL KKTELLEQQI AKLKEKERTL LKDNENLRGK HRNLEAAALV ANHMTTTTAP AAWPRDVPMT
201: SSTAGAADAM DVETDLYIGL PGTERSSNRS ETG
101: LEALDESRRK ILGENLEGFS IEELRGLEMK LEKSLHKIRL KKTELLEQQI AKLKEKERTL LKDNENLRGK HRNLEAAALV ANHMTTTTAP AAWPRDVPMT
201: SSTAGAADAM DVETDLYIGL PGTERSSNRS ETG
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
Arabidopsis Description
AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.