Factsheet for Os12t0206800-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0922800-01
Os02t0579600-00
Os02t0731200-01
Os03t0122600-01
Os04t0304400-01
Os06t0108500-01
Os06t0347700-00
Os08t0431900-00
Os08t0531900-01
Os10t0536100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	Os01t0922800-01	AT2G45660.1	15805477
AT1G71692.1	Os03t0122600-01	AT2G45660.1	15805477
AT1G71692.1	Os06t0108500-01	AT2G45660.1	15805477
AT1G71692.1	Os08t0531900-01	AT2G45660.1	15805477
AT1G71692.1	Os10t0536100-01	AT2G45660.1	15805477
AT1G71692.1	Os02t0579600-00	AT3G57230.1	15805477
AT1G71692.1	Os02t0731200-01	AT3G57230.1	15805477
AT1G71692.1	Os04t0304400-01	AT3G57230.1	15805477
AT1G71692.1	Os06t0347700-00	AT3G57230.1	15805477
AT1G71692.1	Os08t0431900-00	AT3G57230.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016128.1-P	Field mustard	nucleus	24.75	80.65
OQU78925	Sorghum	nucleus	65.35	61.11
PGSC0003DMT400048352	Potato	nucleus	32.67	56.9
Solyc11g032100.1.1	Tomato	nucleus	54.95	55.22
VIT_18s0041g02140.t01	Wine grape	nucleus	53.96	55.05
PGSC0003DMT400048353	Potato	nucleus	20.79	51.22
KRH23802	Soybean	nucleus	50.49	50.0
KRH39983	Soybean	nucleus	49.01	48.77
Os08t0112700-01	Rice	nucleus	53.47	48.65
CDX72816	Canola	mitochondrion, nucleus	48.51	48.51
Bra007972.1-P	Field mustard	nucleus	50.49	48.34
CDY03698	Canola	mitochondrion, nucleus	50.49	48.34
Bra003919.1-P	Field mustard	nucleus	50.49	48.11
CDY37947	Canola	nucleus	50.0	47.87
AT1G71692.1	Thale cress	nucleus	50.0	47.87
CDX96334	Canola	nucleus	49.01	46.48
CDY36686	Canola	mitochondrion, nucleus	45.54	43.6
Bra016129.1-P	Field mustard	nucleus	19.31	41.49

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4351752	ProteinID:ABA96134.2	EMBL:AY177700	ProteinID:BAF29403.1
ProteinID:BAT16296.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os12g0206800	EnsemblPlants:Os12t0206800-00	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF338
UniProt:Q2QW55	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0000191F87	RefSeq:XP_015618440.1	:	:	:	:

Description

MADS BOX GENE 33Transcription factor, MADS-box domain containing protein. (Os12t0206800-00)

Coordinates

chr12:-:5569644..5573023

Molecular Weight (calculated)

23234.5 Da

IEP (calculated)

9.849

GRAVY (calculated)

-0.498

Length

202 amino acids

Sequence
(BLAST)

001: MVRGKVQMRR IENPVHRQVT FCKRRGGLLK KARELSVLCD ADVGVIIFSS QGKLHELATN GNMHNLVERY QSNVAGGQME PGALQRQQVA EQGIFLLREE
101: IDLLQRGLRS TYGGGAGEMT LDKLHALEKG LELWIYQIRT TKMQMMQQEI QFLRNKEGIL KEANEMLQEK VKEQQKLYMS LLDLHSQQPT QPMTYGNRFF
201: SI

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.