CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69036
CDX69345
CDX72465
CDX74755
CDX75412
CDX75686
CDX90394
CDY25046
CDY27368
CDY37054
CDY49287
CDY50584
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	CDY25046	AT1G48150.1	15805477
AT1G71692.1	CDY50584	AT1G48150.1	15805477
AT1G71692.1	CDX74755	AT2G45660.1	15805477
AT1G71692.1	CDY27368	AT2G45660.1	15805477
AT1G71692.1	CDY37054	AT2G45660.1	15805477
AT1G71692.1	CDY53886	AT2G45660.1	15805477
AT1G71692.1	CDY60689	AT2G45660.1	15805477
AT1G71692.1	CDY69077	AT2G45660.1	15805477
AT1G71692.1	CDX69036	AT3G57230.1	15805477
AT1G71692.1	CDX72465	AT3G57230.1	15805477
AT1G71692.1	CDX75412	AT3G57230.1	15805477
AT1G71692.1	CDY49287	AT3G57230.1	15805477
AT1G71692.1	CDX69345	AT4G37940.1	15805477
AT1G71692.1	CDX75686	AT4G37940.1	15805477
AT1G71692.1	CDX90394	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007972.1-P	Field mustard	nucleus	99.53	99.53
CDY37947	Canola	nucleus	98.58	98.58
AT1G71692.1	Thale cress	nucleus	93.36	93.36
CDX96334	Canola	nucleus	93.36	92.49
CDX72816	Canola	mitochondrion, nucleus	84.83	88.61
CDY36686	Canola	mitochondrion, nucleus	83.41	83.41
VIT_18s0041g02140.t01	Wine grape	nucleus	60.19	64.14
KRH39983	Soybean	nucleus	61.61	64.04
PGSC0003DMT400048352	Potato	nucleus	33.65	61.21
KRH23802	Soybean	nucleus	58.77	60.78
Solyc11g032100.1.1	Tomato	nucleus	56.87	59.7
PGSC0003DMT400048353	Potato	nucleus	20.38	52.44
GSMUA_Achr7P02960_001	Banana	nucleus	56.87	50.63
Os12t0206800-00	Rice	nucleus	48.34	50.49
TraesCS2D01G309300.1	Wheat	nucleus	48.34	50.49
TraesCS2A01G311100.1	Wheat	nucleus	48.34	50.49
EES13239	Sorghum	mitochondrion, nucleus	53.08	50.45
GSMUA_Achr11P...	Banana	nucleus	53.55	50.45
Zm00001d025479_P001	Maize	nucleus	46.45	49.25
KXG26379	Sorghum	nucleus	47.39	48.78
Os08t0112700-01	Rice	nucleus	51.18	48.65
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	51.66	47.6
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	52.13	47.41
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	51.66	47.39
Zm00001d035053_P002	Maize	nucleus	42.65	45.92
OQU78925	Sorghum	nucleus	45.02	43.98
Zm00001d049692_P001	Maize	nucleus	49.76	39.92
TraesCS1B01G467500.1	Wheat	nucleus	1.42	3.06

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078EVU2	EnsemblPlants:CDY03698	ProteinID:CDY03698	ProteinID:CDY03698.1
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00116497001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0004EF303E	SEG:seg	:	:	:

Description

BnaA02g15390D

Coordinates

chrLK031945:-:574247..578747

Molecular Weight (calculated)

23981.3 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.363

Length

211 amino acids

Sequence
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMDGIIDKY MKCTGGGRGS SSAIFTAQEQ LQPPNLEPKD
101: EVNVLKREIE MLQKGIRYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MEIMLQEIQS LRNKEGVLKN ANKYLLEKIE ENNNSILDAN FTTVDTNYSY
201: PLTMPSEIFQ F

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.