Factsheet for Zm00001d025479_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003409_P001
Zm00001d016957_P003
Zm00001d017932_P002
Zm00001d027425_P001
Zm00001d031625_P001
Zm00001d039913_P002
Zm00001d042315_P001
Zm00001d047355_P001
Zm00001d047356_P002
Zm00001d048474_P001
Zm00001d050897_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	Zm00001d027425_P001	AT2G45660.1	15805477
AT1G71692.1	Zm00001d031625_P001	AT2G45660.1	15805477
AT1G71692.1	Zm00001d039913_P002	AT2G45660.1	15805477
AT1G71692.1	Zm00001d042315_P001	AT2G45660.1	15805477
AT1G71692.1	Zm00001d047355_P001	AT2G45660.1	15805477
AT1G71692.1	Zm00001d047356_P002	AT2G45660.1	15805477
AT1G71692.1	Zm00001d048474_P001	AT2G45660.1	15805477
AT1G71692.1	Zm00001d003409_P001	AT3G57230.1	15805477
AT1G71692.1	Zm00001d016957_P003	AT3G57230.1	15805477
AT1G71692.1	Zm00001d017932_P002	AT3G57230.1	15805477
AT1G71692.1	Zm00001d050897_P002	AT3G57230.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26379	Sorghum	nucleus	88.94	86.34
Bra016128.1-P	Field mustard	nucleus	23.12	74.19
TraesCS2B01G328000.1	Wheat	nucleus	73.37	72.28
TraesCS2D01G309300.1	Wheat	nucleus	72.36	71.29
TraesCS2A01G311100.1	Wheat	nucleus	72.36	71.29
PGSC0003DMT400048352	Potato	nucleus	35.18	60.34
VIT_18s0041g02140.t01	Wine grape	nucleus	51.26	51.52
Solyc11g032100.1.1	Tomato	nucleus	50.75	50.25
KRH39983	Soybean	nucleus	49.75	48.77
Zm00001d035053_P002	Maize	nucleus	46.73	47.45
KRH23802	Soybean	nucleus	48.24	47.06
CDX72816	Canola	mitochondrion, nucleus	47.74	47.03
CDY03698	Canola	mitochondrion, nucleus	49.25	46.45
Bra007972.1-P	Field mustard	nucleus	49.25	46.45
CDY37947	Canola	nucleus	48.74	45.97
AT1G71692.1	Thale cress	nucleus	48.24	45.5
Bra003919.1-P	Field mustard	nucleus	48.24	45.28
CDX96334	Canola	nucleus	47.74	44.6
CDY36686	Canola	mitochondrion, nucleus	44.22	41.71
Zm00001d049692_P001	Maize	nucleus	52.76	39.92
PGSC0003DMT400048353	Potato	nucleus	16.08	39.02
Bra016129.1-P	Field mustard	nucleus	16.58	35.11

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AQK43833.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K7UIP1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF331	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002220626	EnsemblPlantsGene:Zm00001d025479	EnsemblPlants:Zm00001d025479_P001	EnsemblPlants:Zm00001d025479_T001	:	:

Description

MADS-transcription factor 30Putative MADS-box transcription factor family protein

Coordinates

chr10:-:120092000..120093934

Molecular Weight (calculated)

22895.9 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.429

Length

199 amino acids

Sequence
(BLAST)

001: MARGKVQMRR IENPVHRQVT FCKRRMGLLK KARELSVLCD AAIGVIVISP HGKIYDLATN GNMQGLIERY RRACSEMHGE SSNHNETQTI KQEVLALTHE
101: IDLLQKGFRY MHGENDINHM NLVELQTLEN NLEMWANNIR SQKMQIISRE IDMLRNKEAI LQAVNGVLQE RIIEQNGILN FSGTAMTPSQ LTMESNYYL

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.