Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016128.1-P | Field mustard | nucleus | 28.44 | 96.77 |
| CDY03698 | Canola | mitochondrion, nucleus | 93.36 | 93.36 |
| Bra007972.1-P | Field mustard | nucleus | 92.89 | 92.89 |
| CDY37947 | Canola | nucleus | 91.94 | 91.94 |
| CDX96334 | Canola | nucleus | 92.42 | 91.55 |
| Bra016129.1-P | Field mustard | nucleus | 40.76 | 91.49 |
| Bra003919.1-P | Field mustard | nucleus | 91.47 | 91.04 |
| CDX72816 | Canola | mitochondrion, nucleus | 84.36 | 88.12 |
| CDY36686 | Canola | mitochondrion, nucleus | 84.36 | 84.36 |
| KRH39983 | Soybean | nucleus | 62.09 | 64.53 |
| PGSC0003DMT400048352 | Potato | nucleus | 35.07 | 63.79 |
| VIT_18s0041g02140.t01 | Wine grape | nucleus | 59.24 | 63.13 |
| KRH23802 | Soybean | nucleus | 58.77 | 60.78 |
| Solyc11g032100.1.1 | Tomato | nucleus | 57.82 | 60.7 |
| PGSC0003DMT400048353 | Potato | nucleus | 19.91 | 51.22 |
| EES13239 | Sorghum | mitochondrion, nucleus | 53.55 | 50.9 |
| GSMUA_Achr11P... | Banana | nucleus | 54.03 | 50.89 |
| GSMUA_Achr7P02960_001 | Banana | nucleus | 56.87 | 50.63 |
| Os12t0206800-00 | Rice | nucleus | 47.87 | 50.0 |
| TraesCS2D01G309300.1 | Wheat | nucleus | 47.39 | 49.51 |
| TraesCS2A01G311100.1 | Wheat | nucleus | 47.39 | 49.51 |
| Os08t0112700-01 | Rice | nucleus | 51.66 | 49.1 |
| Zm00001d025479_P001 | Maize | nucleus | 45.5 | 48.24 |
| KXG26379 | Sorghum | nucleus | 45.97 | 47.32 |
| TraesCS7A01G319400.2 | Wheat | mitochondrion, nucleus | 51.18 | 47.16 |
| TraesCS7D01G315900.1 | Wheat | mitochondrion, nucleus | 51.66 | 46.98 |
| HORVU7Hr1G076310.14 | Barley | mitochondrion, nucleus | 51.18 | 46.96 |
| Zm00001d035053_P002 | Maize | nucleus | 41.23 | 44.39 |
| OQU78925 | Sorghum | nucleus | 44.55 | 43.52 |
| Zm00001d049692_P001 | Maize | nucleus | 49.29 | 39.54 |
| TraesCS1B01G467500.1 | Wheat | nucleus | 0.95 | 2.04 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:843497 | ProteinID:AAF43220.1 | ProteinID:AAG51837.1 | ProteinID:AEE35216.1 |
| Symbol:AGL12 | EMBL:AK228190 | ArrayExpress:AT1G71692 | EnsemblPlantsGene:AT1G71692 | RefSeq:AT1G71692 | TAIR:AT1G71692 |
| RefSeq:AT1G71692-TAIR-G | EnsemblPlants:AT1G71692.1 | TAIR:AT1G71692.1 | Unigene:At.19719 | EMBL:BT006157 | EMBL:BT008332 |
| EMBL:BT008524 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010228 |
| GO:GO:0040007 | GO:GO:0040008 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048364 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_565022.1 | PFAM:PF00319 | PFAM:PF01486 |
| PO:PO:0000005 | PO:PO:0000229 | PO:PO:0000263 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0003011 |
| PO:PO:0003015 | PO:PO:0004507 | PO:PO:0005017 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009031 | PO:PO:0020100 | PO:PO:0020124 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF152 | UniProt:Q38841 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EMBL:U20193 | UniParc:UPI0000125680 | SEG:seg |
Description
AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
Coordinates
chr1:-:26952545..26955127
Molecular Weight (calculated)
23920.2 Da
IEP (calculated)
7.343
GRAVY (calculated)
-0.365
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.