Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0041g02140.t01 | Wine grape | nucleus | 6.12 | 3.03 |
| KRH39983 | Soybean | nucleus | 6.12 | 2.96 |
| KRH23802 | Soybean | nucleus | 6.12 | 2.94 |
| TraesCS7B01G220200.1 | Wheat | mitochondrion, nucleus | 6.12 | 2.62 |
| Solyc11g032100.1.1 | Tomato | nucleus | 5.1 | 2.49 |
| TraesCS2B01G328000.1 | Wheat | nucleus | 5.1 | 2.48 |
| PGSC0003DMT400048353 | Potato | nucleus | 2.04 | 2.44 |
| CDY36686 | Canola | mitochondrion, nucleus | 5.1 | 2.37 |
| Bra003919.1-P | Field mustard | nucleus | 4.08 | 1.89 |
| PGSC0003DMT400048352 | Potato | nucleus | 2.04 | 1.72 |
| CDY37947 | Canola | nucleus | 3.06 | 1.42 |
| CDY03698 | Canola | mitochondrion, nucleus | 3.06 | 1.42 |
| Bra007972.1-P | Field mustard | nucleus | 3.06 | 1.42 |
| CDX96334 | Canola | nucleus | 3.06 | 1.41 |
| Bra016129.1-P | Field mustard | nucleus | 1.02 | 1.06 |
| CDX72816 | Canola | mitochondrion, nucleus | 2.04 | 0.99 |
| AT1G71692.1 | Thale cress | nucleus | 2.04 | 0.95 |
| Bra016128.1-P | Field mustard | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G467500.1 | EnsemblPlantsGene:TraesCS1B01G467500 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF172 | PFAM:PF00319 | PFscan:PS50066 | PRINTS:PR00404 |
| SMART:SM00432 | SUPFAM:SSF55455 | MapMan:15.5.14 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:677273709..677274005
Molecular Weight (calculated)
10891.4 Da
IEP (calculated)
9.700
GRAVY (calculated)
0.064
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MGRRGKLEVK RIDDDGSRLV TFCKRRGTLL KKARELAVLC DEDASLGLVV FSSTGNLAGD YCSPNTRYVA RLICPVLSLM HARAPVTYIF PLSFVKLE
001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
Arabidopsis Description
AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.