Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G322700.2 | Wheat | nucleus | 98.76 | 98.76 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 98.34 | 98.34 |
| HORVU6Hr1G073040.2 | Barley | nucleus | 94.61 | 94.61 |
| Os02t0731200-01 | Rice | nucleus | 81.74 | 81.74 |
| OQU85464 | Sorghum | nucleus | 77.18 | 76.86 |
| Zm00001d017932_P002 | Maize | nucleus | 71.78 | 73.31 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 64.32 | 63.52 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 25.31 | 62.89 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 61.83 | 62.08 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 59.34 | 60.85 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 57.68 | 58.9 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 58.09 | 57.14 |
| CDY49287 | Canola | nucleus | 54.36 | 54.58 |
| CDX75412 | Canola | nucleus | 54.36 | 54.58 |
| CDX72465 | Canola | nucleus | 54.36 | 54.58 |
| Bra017638.1-P | Field mustard | nucleus | 54.36 | 54.58 |
| CDX69036 | Canola | nucleus | 53.94 | 54.17 |
| AT3G57230.1 | Thale cress | nucleus | 53.53 | 53.75 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 47.72 | 50.0 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 47.3 | 49.57 |
| KRH42047 | Soybean | nucleus | 48.96 | 48.96 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 47.3 | 48.93 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 47.3 | 48.31 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 46.89 | 46.5 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 44.4 | 45.73 |
| Bra011509.1-P | Field mustard | nucleus | 51.04 | 42.41 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 25.31 | 41.22 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 37.34 | 40.0 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 36.1 | 34.52 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 32.37 | 34.36 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 34.02 | 34.02 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 31.54 | 33.48 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 35.27 | 33.46 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 34.44 | 33.2 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 32.37 | 33.05 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 30.71 | 32.89 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 35.68 | 31.97 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 36.1 | 31.75 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 35.68 | 31.73 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 34.85 | 31.46 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 31.12 | 30.24 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 31.54 | 30.16 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 30.71 | 29.84 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 33.2 | 29.41 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS6D01G273500 | EnsemblPlants:TraesCS6D01G273500.2 | TIGR:cd00265 |
Description
No Description!
Coordinates
chr6D:+:382345371..382352789
Molecular Weight (calculated)
27142.4 Da
IEP (calculated)
9.631
GRAVY (calculated)
-0.695
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIRR IDNSTNRQVT FSKRRGGLLK KAKELSILCD AEVGLVVFSS TGRLHEFSST NMKAVIDRYT KAKEEQPGVN ATSEIKLWQR EAASLRQQLH
101: DLQESHKQLM GEELSSLGVR DLQGLENRLE MSLRSIKTRK DNLLRSEIEE LHRKGSLIHQ ENTELCRRLN IMSQQKMELS RKLQSCESGG ATDANKSSST
201: PFSFRIVQDT NIPANLELSQ AQQNEQEHSE TGAPALGLQL S
101: DLQESHKQLM GEELSSLGVR DLQGLENRLE MSLRSIKTRK DNLLRSEIEE LHRKGSLIHQ ENTELCRRLN IMSQQKMELS RKLQSCESGG ATDANKSSST
201: PFSFRIVQDT NIPANLELSQ AQQNEQEHSE TGAPALGLQL S
001: MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGVIIFSS TGKLYDYASN SSMKTIIERY NRVKEEQHQL LNHASEIKFW QREVASLQQQ
101: LQYLQECHRK LVGEELSGMN ANDLQNLEDQ LVTSLKGVRL KKDQLMTNEI RELNRKGQII QKENHELQNI VDIMRKENIK LQKKVHGRTN AIEGNSSVDP
201: ISNGTTTYAP PQLQLIQLQP APREKSIRLG LQLS
101: LQYLQECHRK LVGEELSGMN ANDLQNLEDQ LVTSLKGVRL KKDQLMTNEI RELNRKGQII QKENHELQNI VDIMRKENIK LQKKVHGRTN AIEGNSSVDP
201: ISNGTTTYAP PQLQLIQLQP APREKSIRLG LQLS
Arabidopsis Description
ANR1AGAMOUS-like 44 [Source:TAIR;Acc:AT2G14210]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.