Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G144800.1 | Wheat | nucleus | 99.26 | 99.26 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 99.26 | 99.26 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 93.31 | 76.99 |
| Os05t0203800-02 | Rice | nucleus | 77.32 | 76.47 |
| KRH14461 | Soybean | nucleus | 27.14 | 70.19 |
| GSMUA_Achr10P... | Banana | nucleus | 55.39 | 65.07 |
| OQU77603 | Sorghum | nucleus | 69.89 | 64.38 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 65.43 | 64.23 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 52.79 | 62.83 |
| Zm00001d037737_P001 | Maize | nucleus | 68.03 | 59.8 |
| CDY09267 | Canola | nucleus | 55.02 | 59.44 |
| Solyc02g071730.2.1 | Tomato | nucleus | 54.65 | 59.27 |
| KRH21150 | Soybean | nucleus | 53.53 | 59.26 |
| Bra013364.1-P | Field mustard | nucleus | 55.39 | 59.13 |
| CDX78909 | Canola | nucleus | 55.39 | 59.13 |
| PGSC0003DMT400073134 | Potato | nucleus | 54.28 | 58.87 |
| KRH42930 | Soybean | nucleus | 53.16 | 58.85 |
| Bra012564.1-P | Field mustard | nucleus | 54.65 | 58.57 |
| CDX98597 | Canola | nucleus | 54.65 | 58.57 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 55.02 | 58.27 |
| AT4G18960.1 | Thale cress | nucleus | 54.28 | 57.94 |
| KRH59043 | Soybean | nucleus | 52.04 | 57.61 |
| KRH73684 | Soybean | nucleus | 52.04 | 56.91 |
| KRG98899 | Soybean | nucleus | 51.67 | 56.5 |
| KRH46066 | Soybean | nucleus | 51.67 | 56.28 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 50.19 | 53.57 |
| Bra004716.1-P | Field mustard | nucleus | 47.96 | 52.87 |
| CDX79857 | Canola | nucleus | 47.96 | 52.87 |
| Bra007419.1-P | Field mustard | nucleus | 47.58 | 52.24 |
| Solyc07g055920.2.1 | Tomato | nucleus | 51.67 | 52.06 |
| CDX98330 | Canola | nucleus | 47.96 | 52.02 |
| Bra014552.1-P | Field mustard | nucleus | 47.96 | 52.02 |
| PGSC0003DMT400044552 | Potato | nucleus | 49.07 | 51.97 |
| AT2G42830.2 | Thale cress | nucleus | 47.21 | 51.21 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 50.93 | 50.0 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 17.84 | 49.48 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 45.72 | 49.2 |
| CDX99406 | Canola | nucleus | 55.76 | 48.08 |
| GSMUA_Achr10P... | Banana | nucleus | 56.13 | 47.34 |
| AT3G58780.4 | Thale cress | nucleus | 49.44 | 47.33 |
| CDY49254 | Canola | nucleus | 47.96 | 46.91 |
| CDX89005 | Canola | nucleus | 47.58 | 46.38 |
| CDY00589 | Canola | nucleus | 47.21 | 46.18 |
| Bra003356.1-P | Field mustard | nucleus | 43.49 | 42.86 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 32.71 | 38.77 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 32.34 | 38.67 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 33.83 | 37.76 |
| CDX67765 | Canola | nucleus | 48.7 | 37.64 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 32.71 | 37.29 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 31.23 | 37.0 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 31.97 | 35.68 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 33.09 | 35.32 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 32.34 | 35.08 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 35.32 | 34.93 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 31.6 | 34.27 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 28.62 | 33.48 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 28.25 | 33.04 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 30.86 | 32.68 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 28.62 | 32.08 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 27.88 | 31.78 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 27.14 | 31.33 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 27.14 | 31.2 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 30.48 | 30.71 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 30.86 | 30.63 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 27.51 | 30.45 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 25.28 | 30.22 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF332 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1D01G127700 | EnsemblPlants:TraesCS1D01G127700.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:140519165..140526610
Molecular Weight (calculated)
30420.1 Da
IEP (calculated)
9.627
GRAVY (calculated)
-0.769
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MQILNEQLAA PSTGLMVKES ASPGSGSGSA GGAAEKMGRG RIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSGRGRL YEYSNNSVKA
101: TIERYKKATS DTSSAGTVAE INAQHYQQES AKLKQQITTL QNSNRTLIGD TMATMSHRDL KQLEGRLDKG LGKIRARKNE LLCAEIEYMQ RREMELQNNN
201: FFLREKVAET ERGQQQTLNM MGAASTSNEY EQNMIHCDPR TFLQFNFMQQ QPQYYSQQED RKSFNSVGR
101: TIERYKKATS DTSSAGTVAE INAQHYQQES AKLKQQITTL QNSNRTLIGD TMATMSHRDL KQLEGRLDKG LGKIRARKNE LLCAEIEYMQ RREMELQNNN
201: FFLREKVAET ERGQQQTLNM MGAASTSNEY EQNMIHCDPR TFLQFNFMQQ QPQYYSQQED RKSFNSVGR
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.