Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044552 | Potato | nucleus | 91.39 | 96.06 |
| KRH14461 | Soybean | nucleus | 31.46 | 80.77 |
| KRH73684 | Soybean | nucleus | 63.3 | 68.7 |
| KRH46066 | Soybean | nucleus | 62.55 | 67.61 |
| KRG98899 | Soybean | nucleus | 61.8 | 67.07 |
| GSMUA_Achr10P... | Banana | nucleus | 55.81 | 65.07 |
| Solyc02g071730.2.1 | Tomato | nucleus | 60.3 | 64.92 |
| CDX98330 | Canola | nucleus | 60.3 | 64.92 |
| Bra004716.1-P | Field mustard | nucleus | 59.18 | 64.75 |
| CDX79857 | Canola | nucleus | 59.18 | 64.75 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 66.29 | 64.6 |
| Bra014552.1-P | Field mustard | nucleus | 59.18 | 63.71 |
| Bra007419.1-P | Field mustard | nucleus | 58.05 | 63.27 |
| AT2G42830.2 | Thale cress | nucleus | 58.43 | 62.9 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 40.45 | 61.71 |
| AT3G58780.4 | Thale cress | nucleus | 61.42 | 58.36 |
| Solyc11g028020.1.1 | Tomato | nucleus | 48.69 | 58.3 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 54.68 | 57.48 |
| CDY49254 | Canola | nucleus | 58.8 | 57.09 |
| CDX89005 | Canola | nucleus | 58.8 | 56.88 |
| CDY00589 | Canola | nucleus | 58.05 | 56.36 |
| Bra003356.1-P | Field mustard | nucleus | 55.81 | 54.58 |
| EES00105 | Sorghum | nucleus | 53.93 | 53.53 |
| Zm00001d039434_P001 | Maize | nucleus | 52.43 | 53.44 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 53.56 | 52.77 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 53.56 | 52.38 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 53.56 | 52.19 |
| Os01t0201700-02 | Rice | nucleus | 53.93 | 52.17 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 52.43 | 52.04 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 49.06 | 51.98 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 49.06 | 51.98 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 52.06 | 51.67 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 51.69 | 51.3 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 48.69 | 51.18 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 47.57 | 50.8 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 47.57 | 50.4 |
| GSMUA_Achr10P... | Banana | nucleus | 59.93 | 50.16 |
| Os05t0203800-02 | Rice | nucleus | 50.94 | 50.0 |
| Os01t0886200-01 | Rice | nucleus | 49.44 | 49.81 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 47.19 | 49.41 |
| Os12t0207000-01 | Rice | nucleus | 49.81 | 49.26 |
| Zm00001d042591_P002 | Maize | nucleus | 48.69 | 48.51 |
| EES01878 | Sorghum | nucleus | 49.44 | 47.65 |
| Zm00001d023955_P003 | Maize | nucleus | 47.19 | 47.55 |
| EES15827 | Sorghum | nucleus | 47.19 | 46.84 |
| OQU77603 | Sorghum | nucleus | 50.94 | 46.58 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 53.56 | 46.13 |
| CDX67765 | Canola | nucleus | 59.93 | 45.98 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 47.19 | 45.82 |
| Zm00001d041781_P001 | Maize | nucleus | 48.69 | 45.3 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 52.06 | 42.64 |
| Zm00001d037737_P001 | Maize | nucleus | 48.69 | 42.48 |
| Zm00001d008882_P001 | Maize | nucleus | 50.19 | 40.73 |
| Solyc06g064840.2.1 | Tomato | nucleus | 30.34 | 40.3 |
| Solyc03g019710.2.1 | Tomato | nucleus | 26.22 | 39.55 |
| Solyc05g012020.2.1 | Tomato | nucleus | 33.71 | 37.19 |
| Solyc02g091550.1.1 | Tomato | nucleus | 32.21 | 36.6 |
| Solyc04g005320.2.1 | Tomato | nucleus | 31.84 | 35.71 |
| Solyc05g015750.2.1 | Tomato | nucleus | 32.21 | 35.68 |
| Solyc02g089200.2.1 | Tomato | nucleus | 32.58 | 35.37 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 19.48 | 35.14 |
| Solyc03g114840.2.1 | Tomato | nucleus | 32.21 | 34.96 |
| Solyc12g038510.1.1 | Tomato | nucleus | 32.58 | 34.8 |
| Solyc06g069430.2.1 | Tomato | nucleus | 31.84 | 34.69 |
| Solyc01g093960.2.1 | Tomato | nucleus | 32.58 | 34.52 |
| Solyc02g065730.1.1 | Tomato | nucleus | 28.84 | 32.91 |
| Solyc03g114830.2.1 | Tomato | nucleus | 29.96 | 32.39 |
| Solyc05g056620.1.1 | Tomato | nucleus | 29.21 | 31.97 |
| Solyc02g089210.2.1 | Tomato | nucleus | 28.84 | 30.8 |
| Solyc04g076700.2.1 | Tomato | nucleus | 12.73 | 25.76 |
| Solyc12g088090.1.1 | Tomato | nucleus | 18.35 | 22.07 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | UniProt:K4CGC5 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 |
| SMART:SM00432 | SUPFAM:SSF55455 | EnsemblPlantsGene:Solyc07g055920.2 | EnsemblPlants:Solyc07g055920.2.1 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000276AE58 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7:+:63841344..63851220
Molecular Weight (calculated)
29942.4 Da
IEP (calculated)
9.554
GRAVY (calculated)
-0.814
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFPINQELL VDESSSQLRK TSGGTGGGGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV SLIVFSSRGR LYEYANNSVR ATIDRYKKHH
101: ADSTSTGSVS EANTQYYQQE ASKLRRQIRD IQTYNRQIVG EALGSLSPRD LKNLEGKLEK AIGRVRSKKN ELLFSEIELM QKREIELQNA NMYLRIAEVE
201: RAQEQMNLMP GGGGGGGGGG GGGSDHQYHH QPNYEDARNN FLPVNLLEPN PHYSRRDNGD QTPLQLV
101: ADSTSTGSVS EANTQYYQQE ASKLRRQIRD IQTYNRQIVG EALGSLSPRD LKNLEGKLEK AIGRVRSKKN ELLFSEIELM QKREIELQNA NMYLRIAEVE
201: RAQEQMNLMP GGGGGGGGGG GGGSDHQYHH QPNYEDARNN FLPVNLLEPN PHYSRRDNGD QTPLQLV
001: MSYIGSMEEG GSSHDAESSK KLGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC DAEVALVIFS TRGRLYEYAN NSVRGTIERY KKACSDAVNP
101: PSVTEANTQY YQQEASKLRR QIRDIQNSNR HIVGESLGSL NFKELKNLEG RLEKGISRVR SKKNELLVAE IEYMQKREME LQHNNMYLRA KIAEGARLNP
201: DQQESSVIQG TTVYESGVSS HDQSQHYNRN YIPVNLLEPN QQFSGQDQPP LQLV
101: PSVTEANTQY YQQEASKLRR QIRDIQNSNR HIVGESLGSL NFKELKNLEG RLEKGISRVR SKKNELLVAE IEYMQKREME LQHNNMYLRA KIAEGARLNP
201: DQQESSVIQG TTVYESGVSS HDQSQHYNRN YIPVNLLEPN QQFSGQDQPP LQLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.