Factsheet for Os01t0201700-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201700-02
Os01t0886200-01
Os02t0579600-00
Os02t0682200-01
Os02t0731200-01
Os02t0761000-01
Os03t0186600-01
Os03t0752800-02
Os04t0304400-01
Os04t0580700-01
Os05t0203800-02
Os06t0217300-01
Os06t0347700-00
Os07t0108900-02
Os07t0605200-01
Os08t0431900-00
Os08t0531700-01
Os09t0507200-01
Os12t0207000-01
Os12t0501700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	Os02t0682200-01	AT2G45650.1	9418042
AT4G18960.1	Os04t0580700-01	AT2G45650.1	9418042
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15604664
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15604664
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15805477
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15805477
AT4G18960.1	Os08t0531700-01	AT3G02310.1	9418042
AT4G18960.1	Os09t0507200-01	AT3G02310.1	9418042
AT4G18960.1	Os02t0579600-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0731200-01	AT3G57230.1	15805477
AT4G18960.1	Os04t0304400-01	AT3G57230.1	15805477
AT4G18960.1	Os06t0347700-00	AT3G57230.1	15805477
AT4G18960.1	Os08t0431900-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0682200-01	AT3G61120.1	15805477
AT4G18960.1	Os04t0580700-01	AT3G61120.1	15805477
AT4G18960.1	Os01t0201700-02	AT4G18960.1	14555696
AT4G18960.1	Os01t0886200-01	AT4G18960.1	14555696
AT4G18960.1	Os05t0203800-02	AT4G18960.1	14555696
AT4G18960.1	Os12t0207000-01	AT4G18960.1	14555696
AT4G18960.1	Os02t0761000-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0186600-01	AT4G24540.1	15805477
AT4G18960.1	Os06t0217300-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0752800-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0108900-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0605200-01	AT5G60910.1	15805477
AT4G18960.1	Os12t0501700-00	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G314300.1	Wheat	nucleus	80.43	81.32
EES00105	Sorghum	nucleus	78.62	80.67
Zm00001d039434_P001	Maize	nucleus	76.45	80.53
HORVU3Hr1G026650.1	Barley	nucleus	78.99	80.44
TraesCS3D01G140200.2	Wheat	nucleus	79.35	79.93
GSMUA_Achr10P...	Banana	nucleus	59.06	71.18
KRH14461	Soybean	nucleus	26.45	70.19
TraesCS3B01G157500.4	Wheat	nucleus	76.45	68.06
VIT_10s0003g02070.t01	Wine grape	nucleus	55.07	67.26
Os05t0203800-02	Rice	nucleus	64.86	65.81
PGSC0003DMT400073134	Potato	nucleus	55.8	62.1
GSMUA_Achr6P14760_001	Banana	nucleus	56.88	61.81
Solyc02g071730.2.1	Tomato	nucleus	55.43	61.69
KRH21150	Soybean	nucleus	53.99	61.32
CDY09267	Canola	nucleus	54.71	60.64
AT4G18960.1	Thale cress	nucleus	54.71	59.92
CDX98597	Canola	nucleus	53.99	59.36
Bra012564.1-P	Field mustard	nucleus	53.99	59.36
KRH42930	Soybean	nucleus	52.17	59.26
CDX78909	Canola	nucleus	53.99	59.13
Bra013364.1-P	Field mustard	nucleus	53.99	59.13
KRH46066	Soybean	nucleus	52.9	59.11
Zm00001d008882_P001	Maize	nucleus	70.29	58.97
KRG98899	Soybean	nucleus	52.17	58.54
KRH59043	Soybean	nucleus	51.09	58.02
CDX79857	Canola	nucleus	50.72	57.38
Bra004716.1-P	Field mustard	nucleus	50.72	57.38
KRH73684	Soybean	nucleus	51.09	57.32
AT2G42830.2	Thale cress	nucleus	50.0	55.65
Bra014552.1-P	Field mustard	nucleus	49.64	55.24
CDX98330	Canola	nucleus	49.64	55.24
VIT_12s0142g00360.t01	Wine grape	nucleus	54.71	55.11
Bra007419.1-P	Field mustard	nucleus	48.55	54.69
Os12t0207000-01	Rice	nucleus	53.26	54.44
Solyc07g055920.2.1	Tomato	nucleus	52.17	53.93
GSMUA_Achr10P...	Banana	nucleus	61.59	53.29
PGSC0003DMT400044552	Potato	nucleus	48.19	52.36
Os01t0886200-01	Rice	nucleus	48.19	50.19
CDY49254	Canola	nucleus	49.28	49.45
CDX89005	Canola	nucleus	49.28	49.28
AT3G58780.4	Thale cress	nucleus	49.64	48.75
CDY00589	Canola	nucleus	48.55	48.73
CDX99406	Canola	nucleus	54.35	48.08
Os08t0431900-00	Rice	nucleus	26.45	45.91
Bra003356.1-P	Field mustard	nucleus	44.93	45.42
Os06t0347700-00	Rice	nucleus	22.83	42.86
CDX67765	Canola	nucleus	50.0	39.66
Os06t0162800-01	Rice	nucleus	31.88	39.11
Os02t0682200-01	Rice	nucleus	33.7	37.2
Os04t0304400-01	Rice	nucleus	28.99	35.24
Os04t0580700-01	Rice	nucleus	31.88	34.65
Os02t0731200-01	Rice	nucleus	30.07	34.44
Os03t0215400-01	Rice	nucleus	31.52	33.85
Os03t0753100-01	Rice	nucleus	28.99	33.47
Os02t0579600-00	Rice	nucleus	28.99	33.33
Os09t0507200-01	Rice	nucleus	29.71	33.06
Os03t0752800-02	Rice	nucleus	28.99	32.52
Os07t0605200-01	Rice	nucleus	28.99	32.13
Os08t0531700-01	Rice	nucleus	28.26	31.33
Os07t0108900-02	Rice	nucleus	29.35	30.34
Os12t0501700-00	Rice	nucleus	24.28	28.76

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010097	GO:GO:0030154	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os01g0201700	EnsemblPlants:Os01t0201700-02
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF332	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0001C7E943	SEG:seg	:	:	:

Description

RICE AGAMOUSSimilar to M23 protein (Fragment). (Os01t0201700-01);Transcription factor, Floral organ development, Lodicule development, Stamen specification, Floral meristem determinacy, Male reproductive development (Os01t0201700-02)

Coordinates

chr1:-:5560202..5568844

Molecular Weight (calculated)

30904.7 Da

IEP (calculated)

9.404

GRAVY (calculated)

-0.667

Length

276 amino acids

Sequence
(BLAST)

001: MMNMMTDLSC GPSSMTELTA AAAPAGSGSS AAVAAGSSEK MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN
101: SVKSTVERYK KANSDTSNSG TVAEVNAQHY QQESSKLRQQ ISSLQNANSR TIVGDSINTM SLRDLKQVEN RLEKGIAKIR ARKNELLYAE VEYMQKREVE
201: LQNDNMYLRS KVVENERGQQ PLNMMGAAST SEYDHMVNNP YDSRNFLQVN IMQQPQHYAH QLQPTTLQLG QQPAFN

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.