Factsheet for HORVU3Hr1G026650.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G032300.1
HORVU1Hr1G008290.4
HORVU1Hr1G008300.3
HORVU1Hr1G023620.1
HORVU1Hr1G029220.1
HORVU2Hr1G063800.7
HORVU2Hr1G080490.1
HORVU3Hr1G026650.1
HORVU4Hr1G077850.13
HORVU5Hr1G000370.3
HORVU5Hr1G076400.1
HORVU5Hr1G095630.3
HORVU6Hr1G066140.9
HORVU6Hr1G073040.2
HORVU6Hr1G077300.8
HORVU7Hr1G023940.2
HORVU7Hr1G024000.2
HORVU7Hr1G036130.10
HORVU7Hr1G054220.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	HORVU0Hr1G032300.1	AT2G45650.1	9418042
AT4G18960.1	HORVU6Hr1G066140.9	AT2G45650.1	9418042
AT4G18960.1	HORVU5Hr1G076400.1	AT3G02310.1	15604664
AT4G18960.1	HORVU7Hr1G054220.3	AT3G02310.1	15604664
AT4G18960.1	HORVU5Hr1G076400.1	AT3G02310.1	15805477
AT4G18960.1	HORVU7Hr1G054220.3	AT3G02310.1	15805477
AT4G18960.1	HORVU5Hr1G076400.1	AT3G02310.1	9418042
AT4G18960.1	HORVU7Hr1G054220.3	AT3G02310.1	9418042
AT4G18960.1	HORVU1Hr1G008290.4	AT3G57230.1	15805477
AT4G18960.1	HORVU1Hr1G008300.3	AT3G57230.1	15805477
AT4G18960.1	HORVU2Hr1G080490.1	AT3G57230.1	15805477
AT4G18960.1	HORVU5Hr1G000370.3	AT3G57230.1	15805477
AT4G18960.1	HORVU6Hr1G073040.2	AT3G57230.1	15805477
AT4G18960.1	HORVU7Hr1G023940.2	AT3G57230.1	15805477
AT4G18960.1	HORVU7Hr1G024000.2	AT3G57230.1	15805477
AT4G18960.1	HORVU0Hr1G032300.1	AT3G61120.1	15805477
AT4G18960.1	HORVU6Hr1G066140.9	AT3G61120.1	15805477
AT4G18960.1	HORVU1Hr1G023620.1	AT4G18960.1	14555696
AT4G18960.1	HORVU1Hr1G029220.1	AT4G18960.1	14555696
AT4G18960.1	HORVU3Hr1G026650.1	AT4G18960.1	14555696
AT4G18960.1	HORVU4Hr1G077850.13	AT4G24540.1	15805477
AT4G18960.1	HORVU6Hr1G077300.8	AT4G24540.1	15805477
AT4G18960.1	HORVU7Hr1G036130.10	AT4G24540.1	15805477
AT4G18960.1	HORVU2Hr1G063800.7	AT5G60910.1	15805477
AT4G18960.1	HORVU5Hr1G095630.3	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G140200.2	Wheat	nucleus	97.42	96.35
TraesCS3A01G314300.1	Wheat	nucleus	96.31	95.6
TraesCS3B01G157500.4	Wheat	nucleus	93.73	81.94
Os01t0201700-02	Rice	nucleus	80.44	78.99
EES00105	Sorghum	nucleus	75.65	76.21
Zm00001d039434_P001	Maize	nucleus	73.06	75.57
GSMUA_Achr10P...	Banana	nucleus	59.78	70.74
KRH14461	Soybean	nucleus	26.94	70.19
VIT_10s0003g02070.t01	Wine grape	nucleus	56.09	67.26
GSMUA_Achr6P14760_001	Banana	nucleus	59.04	62.99
PGSC0003DMT400073134	Potato	nucleus	57.2	62.5
Solyc02g071730.2.1	Tomato	nucleus	56.83	62.1
CDY09267	Canola	nucleus	56.46	61.45
KRH21150	Soybean	nucleus	54.24	60.49
AT4G18960.1	Thale cress	nucleus	56.09	60.32
CDX98597	Canola	nucleus	55.72	60.16
Bra012564.1-P	Field mustard	nucleus	55.72	60.16
CDX78909	Canola	nucleus	55.72	59.92
Bra013364.1-P	Field mustard	nucleus	55.72	59.92
HORVU1Hr1G023620.1	Barley	nucleus	54.61	58.73
KRH46066	Soybean	nucleus	53.51	58.7
KRG98899	Soybean	nucleus	53.14	58.54
KRH42930	Soybean	nucleus	52.03	58.02
KRH73684	Soybean	nucleus	51.66	56.91
KRH59043	Soybean	nucleus	50.55	56.38
CDX79857	Canola	nucleus	50.55	56.15
Bra004716.1-P	Field mustard	nucleus	50.55	56.15
CDX98330	Canola	nucleus	50.92	55.65
Bra007419.1-P	Field mustard	nucleus	49.82	55.1
Bra014552.1-P	Field mustard	nucleus	50.18	54.84
VIT_12s0142g00360.t01	Wine grape	nucleus	54.98	54.38
HORVU1Hr1G029220.1	Barley	nucleus	65.31	54.29
AT2G42830.2	Thale cress	nucleus	49.45	54.03
Solyc07g055920.2.1	Tomato	nucleus	52.77	53.56
PGSC0003DMT400044552	Potato	nucleus	50.18	53.54
Zm00001d008882_P001	Maize	nucleus	64.94	53.5
GSMUA_Achr10P...	Banana	nucleus	61.99	52.66
CDY49254	Canola	nucleus	50.55	49.82
CDX89005	Canola	nucleus	49.82	48.91
AT3G58780.4	Thale cress	nucleus	50.55	48.75
CDY00589	Canola	nucleus	49.45	48.73
CDX99406	Canola	nucleus	56.09	48.72
Bra003356.1-P	Field mustard	nucleus	46.49	46.15
CDX67765	Canola	nucleus	51.29	39.94
HORVU5Hr1G000370.3	Barley	nucleus	28.41	37.2
HORVU6Hr1G073040.2	Barley	nucleus	32.84	36.93
HORVU0Hr1G032300.1	Barley	nucleus	34.32	34.83
HORVU6Hr1G066140.9	Barley	nucleus	34.32	34.7
HORVU7Hr1G023940.2	Barley	nucleus	29.15	34.35
HORVU5Hr1G095710.1	Barley	nucleus	29.52	33.76
HORVU5Hr1G000480.1	Barley	nucleus	23.62	33.68
HORVU5Hr1G076400.1	Barley	nucleus	31.0	33.33
HORVU1Hr1G008290.4	Barley	nucleus	28.78	32.5
HORVU7Hr1G054220.3	Barley	nucleus	29.15	30.86
HORVU7Hr1G025700.6	Barley	nucleus	29.89	29.35
HORVU7Hr1G024000.2	Barley	nucleus	28.78	29.21
HORVU2Hr1G080490.1	Barley	nucleus, plastid	31.73	28.1
HORVU1Hr1G008300.3	Barley	nucleus	28.41	27.11
HORVU2Hr1G063800.7	Barley	nucleus, plastid	30.26	26.8
HORVU5Hr1G095630.3	Barley	nucleus, plastid	29.52	26.06
HORVU4Hr1G067680.14	Barley	nucleus	25.46	24.3

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AK374580	ncoils:Coil	UniProt:F2EEK4	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	EnsemblPlantsGene:HORVU3Hr1G026650	EnsemblPlants:HORVU3Hr1G026650.1	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF187	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001721A76	SEG:seg	:	:

Description

MIKC-type MADS-box transcription factor WM29B [Source:UniProtKB/TrEMBL;Acc:F2EEK4]

Coordinates

chrchr3H:+:110050053..110058241

Molecular Weight (calculated)

30816.5 Da

IEP (calculated)

9.176

GRAVY (calculated)

-0.758

Length

271 amino acids

Sequence
(BLAST)

001: MMSMMADLSC GASGVTVNDH QLTAPAPEES AVAGSEKMGR GRIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV ALVVFSSRGR LYEYSNNSVK
101: ATIERYKKAN SDTSNSGTVA EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK NELMYAEVEY MQKREMELHN
201: DNIYLRSKVS ENERGQQPMN MMASGSTSSE YDHMVAPYDS RNFLQVNMQQ QQHYSQQLQP TALQLGQQYF N

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.