Factsheet for HORVU5Hr1G095710.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G401700.1	Wheat	nucleus	94.09	94.49
TraesCS5B01G396700.1	Wheat	nucleus	94.09	94.49
TraesCS5A01G391800.1	Wheat	nucleus	93.25	92.86
KXG37536	Sorghum	nucleus	80.17	78.84
Zm00001d034047_P007	Maize	nucleus	78.48	77.5
Os03t0753100-01	Rice	nucleus	77.64	76.99
Solyc12g038510.1.1	Tomato	nucleus	52.32	49.6
HORVU5Hr1G076400.1	Barley	nucleus	48.1	45.24
HORVU0Hr1G032300.1	Barley	nucleus	46.84	41.57
HORVU6Hr1G066140.9	Barley	nucleus	46.84	41.42
HORVU7Hr1G054220.3	Barley	nucleus	44.73	41.41
HORVU7Hr1G025700.6	Barley	nucleus	47.68	40.94
HORVU4Hr1G067680.14	Barley	nucleus	43.88	36.62
HORVU5Hr1G000370.3	Barley	nucleus	31.65	36.23
HORVU5Hr1G000480.1	Barley	nucleus	28.69	35.79
HORVU7Hr1G023940.2	Barley	nucleus	31.65	32.61
HORVU1Hr1G023620.1	Barley	nucleus	34.18	32.14
HORVU2Hr1G063800.7	Barley	nucleus, plastid	40.93	31.7
HORVU5Hr1G095630.3	Barley	nucleus, plastid	40.93	31.6
HORVU6Hr1G073040.2	Barley	nucleus	32.07	31.54
HORVU3Hr1G026650.1	Barley	nucleus	33.76	29.52
HORVU7Hr1G024000.2	Barley	nucleus	31.22	27.72
HORVU1Hr1G008290.4	Barley	nucleus	27.43	27.08
HORVU1Hr1G029220.1	Barley	nucleus	36.29	26.38
HORVU2Hr1G080490.1	Barley	nucleus, plastid	33.33	25.82
HORVU1Hr1G008300.3	Barley	nucleus	30.8	25.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:HORVU5Hr1G095710	EnsemblPlants:HORVU5Hr1G095710.1
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0XY82	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF162	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000294CF80	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:599329821..599336076

Molecular Weight (calculated)

27342.0 Da

IEP (calculated)

8.454

GRAVY (calculated)

-0.555

Length

237 amino acids

Sequence
(BLAST)

001: MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALVLFSH AGRLYQFSSS SNMLKTLEKY QRYIFASQDA VVPTTDEMQN NYLEYMELKA
101: RVEVLQHSQR NLLGEDLAPL STTELDQLES QVVKTLRQIR SRKTQVLLDE MCDLKRKEQM LHDANMTLKR KLGEIQVEAT PDPPQQQQLQ VWQGDRGLPS
201: HTPPQPEHFF QALECYPSLQ PVFRGMDVNQ PPPAWMA

Best Arabidopsis Sequence Match ( AT1G24260.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.