Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G391800.1 | Wheat | nucleus | 95.76 | 94.96 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 94.92 | 94.92 |
| HORVU5Hr1G095710.1 | Barley | nucleus | 94.49 | 94.09 |
| KXG37536 | Sorghum | nucleus | 80.51 | 78.84 |
| Zm00001d034047_P007 | Maize | nucleus | 79.24 | 77.92 |
| Os03t0753100-01 | Rice | nucleus | 77.12 | 76.15 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 21.19 | 75.76 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 22.03 | 75.36 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 51.27 | 56.02 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 48.73 | 50.66 |
| Solyc12g038510.1.1 | Tomato | nucleus | 52.12 | 49.2 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 49.58 | 47.37 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 48.31 | 46.15 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 49.15 | 46.03 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 45.34 | 43.5 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 16.95 | 43.01 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 46.19 | 42.08 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 41.95 | 39.44 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 30.51 | 38.5 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 42.8 | 37.83 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 40.68 | 35.04 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 33.47 | 34.05 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 33.05 | 33.91 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 34.32 | 33.75 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 26.69 | 33.69 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 32.63 | 33.48 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 34.75 | 32.54 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 33.05 | 32.37 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 36.86 | 32.34 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 33.47 | 30.98 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 29.24 | 30.94 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 31.78 | 30.86 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 30.08 | 30.08 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 33.9 | 25.81 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF162 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS5B01G396700 | EnsemblPlants:TraesCS5B01G396700.1 | TIGR:cd00265 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:574055844..574061208
Molecular Weight (calculated)
27286.9 Da
IEP (calculated)
8.060
GRAVY (calculated)
-0.615
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALVLFSH AGRLYQFSSS SNMLKTLERY QRYIFASQDA AVPTRDEMQN NYLEYMELKA
101: RVEVLQHSQR NLLGEDLAPL STTELDQLES QVGKTLRQIR SRKTQVLLDE MCDLKRKEQI LEDANMTLKR KLGEIELEAT PDPPQQQQQM WQGDRGVPPH
201: TPPQPEHFFQ ALECYPSLQP VFRGMDVNQP PPAWMV
101: RVEVLQHSQR NLLGEDLAPL STTELDQLES QVGKTLRQIR SRKTQVLLDE MCDLKRKEQI LEDANMTLKR KLGEIELEAT PDPPQQQQQM WQGDRGVPPH
201: TPPQPEHFFQ ALECYPSLQP VFRGMDVNQP PPAWMV
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.