Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G020900.1 | Wheat | nucleus | 89.39 | 85.51 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 53.03 | 37.63 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 95.45 | 27.75 |
| Os06t0162800-01 | Rice | nucleus | 90.91 | 26.67 |
| EER89250 | Sorghum | nucleus | 90.91 | 26.67 |
| Zm00001d045231_P002 | Maize | nucleus | 89.39 | 26.22 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 84.85 | 25.93 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 84.85 | 22.67 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 78.79 | 21.85 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 89.39 | 21.38 |
| KRH70973 | Soybean | nucleus | 78.79 | 21.31 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 75.76 | 21.19 |
| PGSC0003DMT400063315 | Potato | nucleus | 78.79 | 21.14 |
| Solyc03g114840.2.1 | Tomato | nucleus | 78.79 | 21.14 |
| KRH75123 | Soybean | nucleus | 78.79 | 21.14 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 75.76 | 20.83 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 77.27 | 20.73 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 77.27 | 20.65 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 78.79 | 20.63 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 75.76 | 20.33 |
| Bra025126.1-P | Field mustard | nucleus | 78.79 | 20.23 |
| CDY02978 | Canola | nucleus | 77.27 | 19.92 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 75.76 | 19.92 |
| CDY51202 | Canola | nucleus | 77.27 | 19.84 |
| AT2G03710.1 | Thale cress | nucleus | 77.27 | 19.77 |
| CDY04164 | Canola | nucleus | 77.27 | 19.77 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 74.24 | 19.44 |
| Bra026543.1-P | Field mustard | nucleus | 77.27 | 18.96 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 74.24 | 18.92 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 71.21 | 18.43 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 51.52 | 18.18 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 72.73 | 17.84 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 63.64 | 17.43 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 69.7 | 17.23 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 71.21 | 17.15 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 62.12 | 17.08 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 59.09 | 16.96 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 59.09 | 16.81 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 57.58 | 16.52 |
| CDY33113 | Canola | nucleus | 77.27 | 16.5 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 72.73 | 15.48 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 51.52 | 15.25 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 56.06 | 15.23 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 53.03 | 14.83 |
| Bra017376.1-P | Field mustard | nucleus | 50.0 | 13.58 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 10.61 | 3.74 |
| CDY49686 | Canola | nucleus | 1.52 | 0.58 |
| CDY45709 | Canola | nucleus | 1.52 | 0.58 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF274 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS7B01G021100 | EnsemblPlants:TraesCS7B01G021100.1 |
| TIGR:cd00265 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:19140996..19141196
Molecular Weight (calculated)
7660.3 Da
IEP (calculated)
10.847
GRAVY (calculated)
-0.324
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MGRGKVELKR IDNKSSRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS SWYHHI
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK LADGYQMPLQ LNPNQEEVDH YGRHHHQQQQ HSQAFFQPLE
201: CEPILQIGYQ GQQDGMGAGP SVNNYMLGWL PYDTNSI
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK LADGYQMPLQ LNPNQEEVDH YGRHHHQQQQ HSQAFFQPLE
201: CEPILQIGYQ GQQDGMGAGP SVNNYMLGWL PYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.