Factsheet for VIT_17s0000g05000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G020900.1	Wheat	nucleus	21.54	76.81
TraesCS7B01G021100.1	Wheat	nucleus	20.33	75.76
VIT_14s0083g01050.t01	Wine grape	nucleus	72.76	73.66
VIT_01s0011g00110.t01	Wine grape	nucleus	71.14	72.02
VIT_01s0010g03900.t01	Wine grape	nucleus	60.57	67.42
PGSC0003DMT400063315	Potato	nucleus	66.67	66.67
Solyc03g114840.2.1	Tomato	nucleus	65.85	65.85
VIT_14s0068g01800.t01	Wine grape	nucleus	17.07	65.62
GSMUA_Achr8P28100_001	Banana	nucleus	58.94	60.42
Zm00001d045231_P002	Maize	nucleus	52.85	57.78
GSMUA_Achr7P26700_001	Banana	nucleus	55.69	57.56
GSMUA_Achr2P06250_001	Banana	nucleus	52.44	57.08
EER89250	Sorghum	nucleus	52.03	56.89
TraesCS7D01G120500.1	Wheat	nucleus	52.03	56.39
GSMUA_Achr4P14460_001	Banana	nucleus	54.88	56.25
GSMUA_Achr3P15930_001	Banana	nucleus	54.88	56.25
Os06t0162800-01	Rice	nucleus	51.22	56.0
TraesCS7A01G122100.1	Wheat	nucleus	51.63	55.95
TraesCS4B01G245700.1	Wheat	nucleus	48.78	55.56
TraesCS7A01G122000.1	Wheat	nucleus	50.81	55.07
TraesCS7B01G020800.1	Wheat	nucleus	50.41	54.63
TraesCS4D01G243700.1	Wheat	nucleus	48.78	53.33
OQU93000	Sorghum	nucleus	52.44	53.09
VIT_15s0048g01270.t01	Wine grape	nucleus	52.03	52.46
TraesCS7D01G120600.1	Wheat	nucleus	47.97	51.98
Os03t0215400-01	Rice	nucleus	54.06	51.75
Zm00001d048082_P001	Maize	nucleus	50.81	49.6
TraesCS4B01G245800.1	Wheat	nucleus	49.59	49.39
Zm00001d028217_P001	Maize	nucleus	51.63	49.22
TraesCS4D01G245200.1	Wheat	nucleus	48.78	48.39
TraesCS4A01G028200.1	Wheat	nucleus	45.53	48.28
VIT_16s0022g02330.t01	Wine grape	nucleus	48.37	47.79
TraesCS4A01G058900.1	Wheat	nucleus	32.93	47.65
TraesCS4D01G276100.1	Wheat	nucleus	46.34	47.3
TraesCS4A01G028100.1	Wheat	nucleus	46.34	47.11
HORVU7Hr1G025700.6	Barley	nucleus	51.22	45.65
VIT_01s0011g00100.t01	Wine grape	nucleus	44.72	45.64
VIT_14s0083g01030.t01	Wine grape	nucleus	45.12	44.94
VIT_17s0000g04990.t01	Wine grape	nucleus	43.9	44.44
TraesCS4B01G277800.1	Wheat	nucleus	44.31	44.13
TraesCS7B01G021000.1	Wheat	nucleus	32.93	43.32
VIT_18s0041g01880.t01	Wine grape	nucleus	39.02	43.05
VIT_10s0003g02070.t01	Wine grape	nucleus	38.62	42.04
TraesCS4A01G078700.1	Wheat	nucleus	33.74	37.9
HORVU4Hr1G067680.14	Barley	nucleus	43.5	37.68
VIT_00s0211g00180.t01	Wine grape	nucleus	33.33	36.61
VIT_12s0142g00360.t01	Wine grape	nucleus	37.8	33.94
VIT_18s0001g07900.t01	Wine grape	nucleus	32.52	33.33
VIT_17s0000g01230.t01	Wine grape	nucleus	31.71	33.19

Protein Annotations

EntrezGene:100251943	wikigene:100251943	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI15338	ProteinID:CBI15338.3
ncoils:Coil	UniProt:D7SIM7	EMBL:FN594950	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100251943	wikigene:LOC100251943	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF274	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00015CC099	ArrayExpress:VIT_17s0000g05000	EnsemblPlantsGene:VIT_17s0000g05000	EnsemblPlants:VIT_17s0000g05000.t01	unigene:Vvi.20584	RefSeq:XP_002263039
RefSeq:XP_002263039.1	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:5457734..5464468

Molecular Weight (calculated)

28031.5 Da

IEP (calculated)

8.431

GRAVY (calculated)

-0.643

Length

246 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFCSG PSMAKTLEKY QKCSYGALEA SQPVYELTQS SYQEYLKLKT
101: RVEVLQRSQR HLLGEDLDPL NTKELEQLEH QLEMSLKQIR STKTQNMLDQ LADLQNKEHM LIEANNALRR KLEESNGKHP LQQSWEAAGN SALYSRLPAQ
201: SEGFFQPLER NSTLEMGYNA AGSNEITLAA PSQNDNGFGP GWMLWI

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.