Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0009g01910.t01 | |
| VIT_08s0040g00470.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19977 | Canola | nucleus | 27.53 | 66.67 |
| Solyc02g089210.2.1 | Tomato | nucleus | 67.21 | 66.4 |
| PGSC0003DMT400003485 | Potato | nucleus | 65.59 | 65.59 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 63.97 | 65.56 |
| Bra025411.1-P | Field mustard | nucleus | 46.56 | 65.34 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 62.35 | 63.37 |
| VIT_14s0068g01800.t01 | Wine grape | nucleus | 16.19 | 62.5 |
| KRH45099 | Soybean | nucleus | 62.35 | 62.1 |
| PGSC0003DMT400068325 | Potato | nucleus | 58.7 | 61.97 |
| KRH18331 | Soybean | nucleus | 58.7 | 59.43 |
| Solyc02g065730.1.1 | Tomato | nucleus | 56.28 | 59.4 |
| KRG93701 | Soybean | nucleus | 57.89 | 58.61 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 57.89 | 58.13 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 57.09 | 56.85 |
| EER90862 | Sorghum | nucleus | 56.28 | 56.73 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 55.47 | 56.15 |
| EER97510 | Sorghum | nucleus | 57.49 | 56.13 |
| KRH01382 | Soybean | nucleus | 56.68 | 55.34 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 55.87 | 55.2 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 54.66 | 55.1 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 53.85 | 54.96 |
| Os03t0752800-02 | Rice | nucleus | 54.66 | 54.88 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 55.47 | 54.58 |
| Zm00001d022088_P004 | Maize | nucleus | 56.68 | 54.26 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 55.06 | 53.54 |
| CDX86353 | Canola | nucleus | 53.85 | 53.41 |
| Bra036201.1-P | Field mustard | nucleus | 53.44 | 53.23 |
| CDY00082 | Canola | nucleus | 53.44 | 53.23 |
| CDY45899 | Canola | nucleus | 53.04 | 52.61 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 57.49 | 52.4 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 57.49 | 51.82 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 57.49 | 51.82 |
| Os07t0605200-01 | Rice | nucleus | 52.23 | 51.81 |
| Zm00001d018667_P003 | Maize | nucleus | 56.68 | 51.66 |
| EER95753 | Sorghum | nucleus | 56.28 | 51.48 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 47.77 | 51.3 |
| AT3G30260.1 | Thale cress | nucleus | 51.42 | 51.0 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 54.25 | 50.95 |
| Zm00001d013259_P002 | Maize | nucleus | 57.49 | 50.9 |
| GSMUA_Achr10P... | Banana | nucleus | 58.7 | 50.88 |
| Os07t0108900-02 | Rice | nucleus | 54.66 | 50.56 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 54.25 | 50.19 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 53.85 | 49.81 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 53.85 | 49.81 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 51.82 | 48.12 |
| VIT_14s0083g01050.t01 | Wine grape | nucleus | 45.75 | 46.5 |
| VIT_01s0011g00110.t01 | Wine grape | nucleus | 45.75 | 46.5 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 57.49 | 46.41 |
| Zm00001d034045_P003 | Maize | nucleus | 53.44 | 45.36 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 40.49 | 45.25 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 44.94 | 45.12 |
| Zm00001d007949_P001 | Maize | nucleus | 55.47 | 44.92 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 43.72 | 44.26 |
| VIT_16s0022g02330.t01 | Wine grape | nucleus | 44.53 | 44.18 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 54.25 | 43.65 |
| Os12t0501700-00 | Rice | nucleus | 40.08 | 42.49 |
| KXG23502 | Sorghum | nucleus | 38.06 | 42.15 |
| CDX85287 | Canola | nucleus | 31.58 | 41.71 |
| CDY35780 | Canola | nucleus | 31.58 | 39.59 |
| Zm00001d023736_P001 | Maize | nucleus | 39.68 | 38.13 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 34.41 | 37.61 |
| VIT_18s0041g01880.t01 | Wine grape | nucleus | 32.39 | 35.87 |
| VIT_18s0001g07900.t01 | Wine grape | nucleus | 33.6 | 34.58 |
| VIT_17s0000g01230.t01 | Wine grape | nucleus | 32.79 | 34.47 |
| VIT_00s0211g00180.t01 | Wine grape | nucleus | 30.77 | 33.93 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 34.82 | 31.39 |
Protein Annotations
| EntrezGene:100232953 | wikigene:100232953 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AAP32475 | ProteinID:AAP32475.1 |
| ProteinID:AAT07448 | ProteinID:AAT07448.1 | ProteinID:ACZ26529 | ProteinID:ACZ26529.1 | EMBL:AY275713 | EMBL:AY538747 |
| ProteinID:CBI16934 | ProteinID:CBI16934.3 | ncoils:Coil | UniProt:D7SMN6 | EMBL:FN594955 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | EMBL:GU133635 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF241 | SMART:SM00432 | SUPFAM:SSF55455 | TIGR:TC55372 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00015C8ED3 | EntrezGene:VFUL-L | wikigene:VFUL-L | ArrayExpress:VIT_14s0083g01030 |
| EnsemblPlantsGene:VIT_14s0083g01030 | EnsemblPlants:VIT_14s0083g01030.t01 | unigene:Vvi.129 | RefSeq:XP_010660493.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr14:-:23320331..23341036
Molecular Weight (calculated)
28434.0 Da
IEP (calculated)
9.912
GRAVY (calculated)
-0.775
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVQLKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD SSMERILERY ERYSLSERQL LSTDPDPQGN WSMDYPKLTA
101: RIEVLQRNLR HFVGEDLDPL SLRELQNLEQ QLDTALKRIR TRKNQLMHES ISELQKKEKS LVEQNNALAK KVKEKEKVEQ NNRAQWEQQN NIGQNSSAYV
201: VPPPPLQLPS LTIGGSFVGR AVEEDGAEAR PSPNTLMPPW MLRHVNE
101: RIEVLQRNLR HFVGEDLDPL SLRELQNLEQ QLDTALKRIR TRKNQLMHES ISELQKKEKS LVEQNNALAK KVKEKEKVEQ NNRAQWEQQN NIGQNSSAYV
201: VPPPPLQLPS LTIGGSFVGR AVEEDGAEAR PSPNTLMPPW MLRHVNE
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
Arabidopsis Description
AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.