Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G30260.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT3G30260.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT3G30260.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT3G30260.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60686 | Canola | cytosol, nucleus, plastid | 39.22 | 59.7 |
| CDY72391 | Canola | nucleus | 35.29 | 48.0 |
| CDX79856 | Canola | nucleus | 36.27 | 41.57 |
| CDY00082 | Canola | nucleus | 91.18 | 37.5 |
| Bra036201.1-P | Field mustard | nucleus | 90.2 | 37.1 |
| CDY45899 | Canola | nucleus | 86.27 | 35.34 |
| AT3G30260.1 | Thale cress | nucleus | 82.35 | 33.73 |
| CDX86353 | Canola | nucleus | 82.35 | 33.73 |
| CDX71922 | Canola | nucleus | 40.2 | 30.37 |
| CDY36077 | Canola | nucleus | 60.78 | 28.05 |
| CDY34564 | Canola | nucleus | 59.8 | 27.98 |
| Solyc02g089210.2.1 | Tomato | nucleus | 67.65 | 27.6 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 66.67 | 27.53 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 65.69 | 27.35 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 64.71 | 27.27 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 65.69 | 27.24 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 66.67 | 27.2 |
| PGSC0003DMT400003485 | Potato | nucleus | 65.69 | 27.13 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 60.78 | 26.96 |
| PGSC0003DMT400068325 | Potato | nucleus | 61.76 | 26.92 |
| Os07t0605200-01 | Rice | nucleus | 65.69 | 26.91 |
| CDY48451 | Canola | nucleus | 40.2 | 26.8 |
| KRG93701 | Soybean | nucleus | 63.73 | 26.64 |
| KRH18331 | Soybean | nucleus | 63.73 | 26.64 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 64.71 | 26.61 |
| EER90862 | Sorghum | nucleus | 63.73 | 26.53 |
| Solyc02g065730.1.1 | Tomato | nucleus | 60.78 | 26.5 |
| Os03t0752800-02 | Rice | nucleus | 63.73 | 26.42 |
| CDY42841 | Canola | nucleus | 61.76 | 26.25 |
| CDY16832 | Canola | nucleus | 61.76 | 26.14 |
| EER97510 | Sorghum | nucleus | 64.71 | 26.09 |
| Zm00001d022088_P004 | Maize | nucleus | 65.69 | 25.97 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 61.76 | 25.82 |
| CDX95960 | Canola | nucleus | 64.71 | 25.78 |
| CDY33554 | Canola | nucleus | 64.71 | 25.78 |
| CDY65811 | Canola | nucleus | 64.71 | 25.78 |
| CDY47002 | Canola | nucleus | 60.78 | 25.73 |
| CDY02185 | Canola | nucleus | 59.8 | 25.31 |
| CDY58690 | Canola | nucleus | 59.8 | 25.31 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 61.76 | 25.1 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 65.69 | 25.09 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 65.69 | 25.09 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 65.69 | 25.09 |
| KRH45099 | Soybean | nucleus | 60.78 | 25.0 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 61.76 | 24.8 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 63.73 | 24.44 |
| CDY04265 | Canola | nucleus | 65.69 | 24.19 |
| KRH01382 | Soybean | nucleus | 59.8 | 24.11 |
| Os07t0108900-02 | Rice | nucleus | 62.75 | 23.97 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 61.76 | 23.95 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 62.75 | 23.62 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 62.75 | 23.36 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 62.75 | 23.36 |
| EER95753 | Sorghum | nucleus | 61.76 | 23.33 |
| Zm00001d013259_P002 | Maize | nucleus | 63.73 | 23.3 |
| Zm00001d018667_P003 | Maize | nucleus | 61.76 | 23.25 |
| CDY07357 | Canola | nucleus | 65.69 | 23.18 |
| GSMUA_Achr10P... | Banana | nucleus | 62.75 | 22.46 |
| CDY15724 | Canola | nucleus | 54.9 | 22.22 |
| CDY34718 | Canola | nucleus | 54.9 | 22.22 |
| CDY43239 | Canola | nucleus | 53.92 | 22.0 |
| CDY57524 | Canola | nucleus | 53.92 | 22.0 |
| Zm00001d034045_P003 | Maize | nucleus | 62.75 | 21.99 |
| CDY26462 | Canola | nucleus | 53.92 | 21.65 |
| CDY11824 | Canola | nucleus | 51.96 | 21.63 |
| CDY66153 | Canola | nucleus | 51.96 | 21.63 |
| CDX78653 | Canola | nucleus | 54.9 | 21.62 |
| CDY18911 | Canola | nucleus | 50.0 | 21.52 |
| CDX84935 | Canola | nucleus | 52.94 | 21.51 |
| Os12t0501700-00 | Rice | nucleus | 49.02 | 21.46 |
| Zm00001d023736_P001 | Maize | nucleus | 53.92 | 21.4 |
| CDY27603 | Canola | nucleus | 52.94 | 21.34 |
| CDX70651 | Canola | nucleus | 53.92 | 21.24 |
| CDX69499 | Canola | nucleus | 54.9 | 21.21 |
| CDX74754 | Canola | nucleus | 52.94 | 21.09 |
| CDY53885 | Canola | nucleus | 52.94 | 21.01 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 62.75 | 20.91 |
| CDY03905 | Canola | nucleus | 54.9 | 20.74 |
| Zm00001d007949_P001 | Maize | nucleus | 61.76 | 20.66 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 61.76 | 20.52 |
| CDY02978 | Canola | nucleus | 50.0 | 19.92 |
| CDX89097 | Canola | nucleus | 48.04 | 19.92 |
| CDY51202 | Canola | nucleus | 50.0 | 19.84 |
| CDY18912 | Canola | nucleus | 46.08 | 19.5 |
| CDY04164 | Canola | nucleus | 49.02 | 19.38 |
| CDX90741 | Canola | nucleus | 43.14 | 19.05 |
| CDX69345 | Canola | nucleus | 42.16 | 18.94 |
| KXG23502 | Sorghum | nucleus | 41.18 | 18.83 |
| CDX75686 | Canola | nucleus | 42.16 | 18.78 |
| CDY09267 | Canola | nucleus | 45.1 | 18.47 |
| CDX78909 | Canola | nucleus | 45.1 | 18.25 |
| CDX79857 | Canola | nucleus | 43.14 | 18.03 |
| CDX98597 | Canola | nucleus | 44.12 | 17.93 |
| CDX69036 | Canola | nucleus | 42.16 | 17.92 |
| CDX75412 | Canola | nucleus | 42.16 | 17.92 |
| CDX90394 | Canola | nucleus | 40.2 | 17.9 |
| CDX98330 | Canola | nucleus | 43.14 | 17.74 |
| CDY25613 | Canola | nucleus | 38.24 | 17.11 |
| CDX72465 | Canola | nucleus | 40.2 | 17.08 |
| CDY49287 | Canola | nucleus | 40.2 | 17.08 |
| CDX89496 | Canola | nucleus | 37.25 | 16.59 |
| CDY33113 | Canola | nucleus | 50.0 | 16.5 |
| CDY00589 | Canola | nucleus | 43.14 | 16.0 |
| CDX89005 | Canola | nucleus | 43.14 | 15.94 |
| CDY49254 | Canola | nucleus | 42.16 | 15.64 |
| CDY60297 | Canola | nucleus | 43.14 | 15.07 |
| CDX99406 | Canola | nucleus | 45.1 | 14.74 |
| CDY35780 | Canola | nucleus | 26.47 | 13.71 |
| CDX85287 | Canola | nucleus | 23.53 | 12.83 |
| CDY42485 | Canola | nucleus | 47.06 | 12.7 |
| CDX67765 | Canola | nucleus | 43.14 | 12.64 |
| CDX71166 | Canola | nucleus | 41.18 | 12.07 |
| CDY65347 | Canola | nucleus | 12.75 | 8.23 |
| CDY13236 | Canola | mitochondrion | 11.76 | 5.97 |
| CDY71878 | Canola | endoplasmic reticulum | 14.71 | 5.7 |
| CDY01574 | Canola | nucleus | 1.96 | 1.63 |
| CDY45709 | Canola | nucleus | 1.96 | 1.16 |
| CDY49686 | Canola | nucleus | 1.96 | 1.16 |
| CDY65346 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078G4U0 | UniProt:A0A078G4U0 | EnsemblPlants:CDY19977 | ProteinID:CDY19977 |
| ProteinID:CDY19977.1 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00009799001 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF244 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEFAE4 | : |
Description
BnaA09g02740DBnaA09g02740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4U0]
Coordinates
chrLK032102:-:236427..238119
Molecular Weight (calculated)
11690.2 Da
IEP (calculated)
10.624
GRAVY (calculated)
-0.471
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFSP KGKLSEYSAG SSMERILERY ERCSYAGQDV TTPSLNSQVL KHINQYLLHI
101: NH
101: NH
001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
Arabidopsis Description
AGL79AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.