Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25613 | Canola | nucleus | 94.76 | 95.18 |
| Bra030222.1-P | Field mustard | nucleus | 93.45 | 94.27 |
| AT2G22630.2 | Thale cress | nucleus | 79.91 | 80.62 |
| CDX90394 | Canola | nucleus | 76.86 | 76.86 |
| CDX69345 | Canola | nucleus | 75.11 | 75.77 |
| CDX75686 | Canola | nucleus | 74.67 | 74.67 |
| CDY48451 | Canola | nucleus | 44.1 | 66.01 |
| VIT_00s0211g00180.t01 | Wine grape | nucleus | 62.45 | 63.84 |
| Solyc02g091550.1.1 | Tomato | nucleus | 61.14 | 59.57 |
| KRH74451 | Soybean | nucleus | 55.9 | 57.66 |
| CDX72465 | Canola | nucleus | 60.26 | 57.5 |
| CDY49287 | Canola | nucleus | 60.26 | 57.5 |
| KRH39494 | Soybean | nucleus | 55.02 | 57.01 |
| CDX75412 | Canola | nucleus | 57.21 | 54.58 |
| CDX69036 | Canola | nucleus | 55.9 | 53.33 |
| CDY72391 | Canola | nucleus | 16.16 | 49.33 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 14.41 | 49.25 |
| CDX79856 | Canola | nucleus | 17.47 | 44.94 |
| CDX71922 | Canola | nucleus | 24.02 | 40.74 |
| CDY19977 | Canola | nucleus | 16.59 | 37.25 |
| CDX71166 | Canola | nucleus | 55.46 | 36.49 |
| CDX90741 | Canola | nucleus | 34.5 | 34.2 |
| CDY34564 | Canola | nucleus | 31.0 | 32.57 |
| CDY36077 | Canola | nucleus | 31.0 | 32.13 |
| CDX98597 | Canola | nucleus | 34.93 | 31.87 |
| CDY09267 | Canola | nucleus | 34.5 | 31.73 |
| CDX78909 | Canola | nucleus | 34.5 | 31.35 |
| CDY18911 | Canola | nucleus | 32.31 | 31.22 |
| CDY26462 | Canola | nucleus | 34.5 | 31.1 |
| CDY34718 | Canola | nucleus | 33.62 | 30.56 |
| CDY43239 | Canola | nucleus | 33.19 | 30.4 |
| CDY57524 | Canola | nucleus | 33.19 | 30.4 |
| CDX79857 | Canola | nucleus | 32.31 | 30.33 |
| CDX78653 | Canola | nucleus | 34.06 | 30.12 |
| CDX98330 | Canola | nucleus | 32.31 | 29.84 |
| CDY66153 | Canola | nucleus | 31.88 | 29.8 |
| CDY11824 | Canola | nucleus | 31.88 | 29.8 |
| CDY15724 | Canola | nucleus | 32.75 | 29.76 |
| CDY65347 | Canola | nucleus | 20.52 | 29.75 |
| CDX70651 | Canola | nucleus | 33.62 | 29.73 |
| CDX69499 | Canola | nucleus | 34.06 | 29.55 |
| CDY18912 | Canola | nucleus | 31.0 | 29.46 |
| CDY42841 | Canola | nucleus | 30.57 | 29.17 |
| CDX84935 | Canola | nucleus | 31.88 | 29.08 |
| CDY58690 | Canola | nucleus | 30.57 | 29.05 |
| CDY47002 | Canola | nucleus | 30.57 | 29.05 |
| CDY27603 | Canola | nucleus | 31.88 | 28.85 |
| CDY53885 | Canola | nucleus | 32.31 | 28.79 |
| CDY04164 | Canola | nucleus | 32.31 | 28.68 |
| CDY16832 | Canola | nucleus | 30.13 | 28.63 |
| CDY02185 | Canola | nucleus | 30.13 | 28.63 |
| CDY02978 | Canola | nucleus | 31.88 | 28.52 |
| CDY65811 | Canola | nucleus | 31.88 | 28.52 |
| CDX74754 | Canola | nucleus | 31.88 | 28.52 |
| CDX89097 | Canola | nucleus | 30.13 | 28.05 |
| CDY51202 | Canola | nucleus | 31.44 | 28.02 |
| CDY03905 | Canola | nucleus | 32.75 | 27.78 |
| CDX95960 | Canola | nucleus | 31.0 | 27.73 |
| CDY33554 | Canola | nucleus | 31.0 | 27.73 |
| CDY49254 | Canola | nucleus | 33.19 | 27.64 |
| CDX89005 | Canola | nucleus | 31.44 | 26.09 |
| CDY00589 | Canola | nucleus | 31.0 | 25.82 |
| CDY00082 | Canola | nucleus | 27.95 | 25.81 |
| CDX86353 | Canola | nucleus | 27.95 | 25.7 |
| CDX99406 | Canola | nucleus | 34.93 | 25.64 |
| CDY04265 | Canola | nucleus | 31.0 | 25.63 |
| CDY60297 | Canola | nucleus | 32.31 | 25.34 |
| CDY45899 | Canola | nucleus | 27.07 | 24.9 |
| CDY07357 | Canola | nucleus | 31.0 | 24.57 |
| CDY33113 | Canola | nucleus | 32.75 | 24.27 |
| CDY13236 | Canola | mitochondrion | 20.52 | 23.38 |
| CDX67765 | Canola | nucleus | 32.75 | 21.55 |
| CDY01574 | Canola | nucleus | 11.35 | 21.14 |
| CDY71878 | Canola | endoplasmic reticulum | 22.27 | 19.39 |
| CDY49686 | Canola | nucleus | 13.97 | 18.5 |
| CDY42485 | Canola | nucleus | 30.13 | 18.25 |
| CDY45709 | Canola | nucleus | 13.54 | 17.92 |
| CDX85287 | Canola | nucleus | 13.97 | 17.11 |
| CDY35780 | Canola | nucleus | 12.66 | 14.72 |
| CDY65346 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DJW0 | EnsemblPlants:CDX89496 | ProteinID:CDX89496 | ProteinID:CDX89496.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00149769001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEFC50 | : | : | : |
Description
BnaC04g35150D
Coordinates
chrLK031859:+:428769..431911
Molecular Weight (calculated)
26234.5 Da
IEP (calculated)
9.980
GRAVY (calculated)
-0.686
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIKR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSN TDKVYDFASS SMKSAIERFN KTKMEQQQLL NPASEVMFWQ REAATLRQEL
101: HSLQENHRRQ LMGEKLNGLS VNELHNIESR LEMSLRGIRT KKEQMLTDEI KELTKKRNLI HHENLELSRK VQRIHQENIE LHKKVAYATS SSNVLGLGEL
201: EDAADASNAQ VRLQLSQPEQ SCYDSASKS
101: HSLQENHRRQ LMGEKLNGLS VNELHNIESR LEMSLRGIRT KKEQMLTDEI KELTKKRNLI HHENLELSRK VQRIHQENIE LHKKVAYATS SSNVLGLGEL
201: EDAADASNAQ VRLQLSQPEQ SCYDSASKS
001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
Arabidopsis Description
AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.