Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039170.1-P | Field mustard | nucleus | 99.2 | 99.2 |
| CDY43239 | Canola | nucleus | 96.4 | 96.4 |
| CDY34718 | Canola | nucleus | 94.0 | 93.25 |
| AT3G02310.1 | Thale cress | nucleus | 91.6 | 91.6 |
| CDY26462 | Canola | nucleus | 85.6 | 84.25 |
| CDX69499 | Canola | nucleus | 85.6 | 81.06 |
| CDX78653 | Canola | nucleus | 83.2 | 80.31 |
| CDX70651 | Canola | nucleus | 82.8 | 79.92 |
| KRG93698 | Soybean | nucleus | 73.2 | 73.49 |
| KRH18339 | Soybean | nucleus | 73.2 | 73.49 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 19.6 | 73.13 |
| KRH45097 | Soybean | nucleus | 73.2 | 72.91 |
| VIT_14s0083g01050.t01 | Wine grape | nucleus | 70.8 | 72.84 |
| KRH01380 | Soybean | nucleus | 72.8 | 71.37 |
| Solyc02g089200.2.1 | Tomato | nucleus | 64.4 | 65.45 |
| PGSC0003DMT400003483 | Potato | nucleus | 64.0 | 65.04 |
| GSMUA_Achr11P... | Banana | nucleus | 58.0 | 61.7 |
| CDY15724 | Canola | nucleus | 60.4 | 59.92 |
| CDY27603 | Canola | nucleus | 60.4 | 59.68 |
| CDY11824 | Canola | nucleus | 58.4 | 59.59 |
| Os09t0507200-01 | Rice | nucleus | 58.8 | 59.27 |
| CDY66153 | Canola | nucleus | 58.0 | 59.18 |
| EER97012 | Sorghum | nucleus | 57.2 | 58.85 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 59.2 | 58.73 |
| HORVU5Hr1G076400.1 | Barley | nucleus | 59.2 | 58.73 |
| CDY72391 | Canola | nucleus | 17.6 | 58.67 |
| CDX84935 | Canola | nucleus | 58.8 | 58.57 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 57.6 | 58.54 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 58.0 | 58.47 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 58.8 | 58.33 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 58.8 | 58.33 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 57.6 | 58.06 |
| Os08t0531700-01 | Rice | nucleus | 57.2 | 57.43 |
| Zm00001d006094_P001 | Maize | nucleus | 57.6 | 57.37 |
| Zm00001d021057_P001 | Maize | nucleus | 56.0 | 56.68 |
| EES15309 | Sorghum | nucleus | 54.4 | 56.43 |
| CDY03905 | Canola | nucleus | 60.4 | 55.93 |
| HORVU7Hr1G054220.3 | Barley | nucleus | 55.6 | 54.3 |
| CDY19977 | Canola | nucleus | 22.0 | 53.92 |
| Zm00001d031620_P001 | Maize | nucleus | 54.8 | 53.73 |
| CDY04164 | Canola | nucleus | 53.2 | 51.55 |
| CDY51202 | Canola | nucleus | 52.4 | 50.97 |
| CDY02978 | Canola | nucleus | 52.0 | 50.78 |
| CDX79856 | Canola | nucleus | 18.0 | 50.56 |
| CDY18912 | Canola | nucleus | 44.0 | 45.64 |
| CDY18911 | Canola | nucleus | 43.2 | 45.57 |
| CDX71922 | Canola | nucleus | 24.4 | 45.19 |
| CDY34564 | Canola | nucleus | 39.2 | 44.95 |
| CDY36077 | Canola | nucleus | 39.6 | 44.8 |
| CDY48451 | Canola | nucleus | 27.2 | 44.44 |
| CDX74754 | Canola | nucleus | 44.8 | 43.75 |
| CDY53885 | Canola | nucleus | 44.8 | 43.58 |
| CDY33113 | Canola | nucleus | 52.4 | 42.39 |
| CDY42841 | Canola | nucleus | 38.0 | 39.58 |
| CDX89097 | Canola | nucleus | 38.8 | 39.43 |
| CDY58690 | Canola | nucleus | 37.6 | 39.0 |
| CDY16832 | Canola | nucleus | 37.2 | 38.59 |
| CDY02185 | Canola | nucleus | 37.2 | 38.59 |
| CDY47002 | Canola | nucleus | 37.2 | 38.59 |
| CDY33554 | Canola | nucleus | 39.2 | 38.28 |
| CDY65811 | Canola | nucleus | 39.2 | 38.28 |
| CDX95960 | Canola | nucleus | 38.8 | 37.89 |
| CDY45709 | Canola | nucleus | 26.0 | 37.57 |
| CDY45899 | Canola | nucleus | 37.2 | 37.35 |
| CDX90741 | Canola | nucleus | 34.4 | 37.23 |
| CDY49686 | Canola | nucleus | 25.6 | 36.99 |
| CDX86353 | Canola | nucleus | 36.8 | 36.95 |
| CDY00082 | Canola | nucleus | 36.4 | 36.69 |
| CDX79857 | Canola | nucleus | 35.2 | 36.07 |
| CDX98597 | Canola | nucleus | 35.2 | 35.06 |
| CDY09267 | Canola | nucleus | 34.8 | 34.94 |
| CDX78909 | Canola | nucleus | 35.2 | 34.92 |
| CDY04265 | Canola | nucleus | 38.4 | 34.66 |
| CDX75686 | Canola | nucleus | 31.2 | 34.06 |
| CDX69345 | Canola | nucleus | 30.8 | 33.92 |
| CDX98330 | Canola | nucleus | 33.6 | 33.87 |
| CDX69036 | Canola | nucleus | 32.4 | 33.75 |
| CDY07357 | Canola | nucleus | 38.8 | 33.56 |
| CDX75412 | Canola | nucleus | 32.0 | 33.33 |
| CDY25613 | Canola | nucleus | 30.4 | 33.33 |
| CDX89496 | Canola | nucleus | 30.4 | 33.19 |
| CDX90394 | Canola | nucleus | 30.4 | 33.19 |
| CDY49287 | Canola | nucleus | 31.2 | 32.5 |
| CDX72465 | Canola | nucleus | 30.8 | 32.08 |
| CDY49254 | Canola | nucleus | 35.2 | 32.0 |
| CDX89005 | Canola | nucleus | 34.4 | 31.16 |
| CDY00589 | Canola | nucleus | 34.0 | 30.91 |
| CDX99406 | Canola | nucleus | 35.2 | 28.21 |
| CDY60297 | Canola | nucleus | 32.4 | 27.74 |
| CDX85287 | Canola | nucleus | 19.6 | 26.2 |
| CDY42485 | Canola | nucleus | 39.2 | 25.93 |
| CDY35780 | Canola | nucleus | 19.6 | 24.87 |
| CDX67765 | Canola | nucleus | 34.0 | 24.43 |
| CDY65347 | Canola | nucleus | 15.2 | 24.05 |
| CDY01574 | Canola | nucleus | 11.6 | 23.58 |
| CDY13236 | Canola | mitochondrion | 18.8 | 23.38 |
| CDX71166 | Canola | nucleus | 31.6 | 22.7 |
| CDY71878 | Canola | endoplasmic reticulum | 20.4 | 19.39 |
| CDY65346 | Canola | cytosol | 1.6 | 16.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078J4A3 | UniProt:A0A078J4A3 | EnsemblPlants:CDY57524 | ProteinID:CDY57524 |
| ProteinID:CDY57524.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00022303001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF353 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF0F2B | : |
Description
BnaA05g33600DBnaA05g33600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4A3]
Coordinates
chrLK033583:-:12997..15391
Molecular Weight (calculated)
28526.3 Da
IEP (calculated)
8.347
GRAVY (calculated)
-0.668
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLDRY QKCSYGSVEV NNKPAKELEN SYREYLKLKG
101: RYENLQLQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LTDLQGKEHM LLEANRALSI KLEDMIGMRS HHVGGAWEGG DQQNVAYGHH
201: QTQPQGLFQS LECDPTLQIG YNHPVCSEQM AVTTQGPSQP GNGYIPGWML
101: RYENLQLQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LTDLQGKEHM LLEANRALSI KLEDMIGMRS HHVGGAWEGG DQQNVAYGHH
201: QTQPQGLFQS LECDPTLQIG YNHPVCSEQM AVTTQGPSQP GNGYIPGWML
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
Arabidopsis Description
SEP2SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.