CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73487
CDX76152
CDX88663
CDY01754
CDY02805
CDY04768
CDY13200
CDY21400
CDY25761
CDY28576
CDY28577
CDY32715
CDY34718
CDY43239
CDY43875
CDY57524
CDY58569
CDY62688
CDY68276
CDY69833

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	CDY04768	AT1G22920.1	21798944
AT5G20240.1	CDY21400	AT1G22920.1	21798944
AT5G20240.1	CDY25761	AT1G22920.1	21798944
AT5G20240.1	CDY01754	AT1G69690.1	21798944
AT5G20240.1	CDY28576	AT1G69690.1	21798944
AT5G20240.1	CDY28577	AT1G69690.1	21798944
AT5G20240.1	CDY68276	AT1G69690.1	21798944
AT5G20240.1	CDY34718	AT3G02310.1	15604664
AT5G20240.1	CDY43239	AT3G02310.1	15604664
AT5G20240.1	CDY57524	AT3G02310.1	15604664
AT5G20240.1	CDX73487	AT3G54340.1	15604664
AT5G20240.1	CDX76152	AT3G54340.1	15604664
AT5G20240.1	CDY13200	AT3G54340.1	15604664
AT5G20240.1	CDY69833	AT3G54340.1	15604664
AT5G20240.1	CDX88663	AT5G58230.1	23778966
AT5G20240.1	CDY02805	AT5G58230.1	23778966
AT5G20240.1	CDY32715	AT5G58230.1	23778966
AT5G20240.1	CDY43875	AT5G58230.1	23778966
AT5G20240.1	CDY58569	AT5G58230.1	23778966
AT5G20240.1	CDY62688	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92479	Canola	nucleus	97.4	97.4
Bra002285.1-P	Field mustard	nucleus	90.91	95.89
AT5G20240.1	Thale cress	nucleus	88.31	65.38
CDY60377	Canola	nucleus	85.71	65.02
CDX88846	Canola	nucleus	85.71	65.02
CDY45099	Canola	nucleus	85.06	64.53
KRH64611	Soybean	nucleus	62.99	53.59
KRH53304	Soybean	nucleus	61.69	52.49
VIT_18s0001g01760.t01	Wine grape	nucleus	64.94	47.17
KRH16433	Soybean	nucleus	62.99	46.63
KRH18034	Soybean	nucleus	62.34	46.15
Solyc06g059970.2.1	Tomato	nucleus	62.99	45.33
PGSC0003DMT400019070	Potato	nucleus	59.09	43.33
GSMUA_Achr5P01230_001	Banana	nucleus	58.44	42.65
GSMUA_Achr6P18670_001	Banana	nucleus	57.14	41.71
Os01t0883100-01	Rice	nucleus	55.19	40.67
TraesCS3A01G406500.2	Wheat	nucleus	55.19	40.67
TraesCS3D01G401700.1	Wheat	nucleus	55.19	40.67
EES01864	Sorghum	nucleus	54.55	40.19
TraesCS3B01G440200.3	Wheat	nucleus	55.19	39.72
TraesCS1A01G264300.1	Wheat	nucleus	53.25	39.42
TraesCS1B01G275000.1	Wheat	nucleus	53.25	39.42
EES18254	Sorghum	nucleus	53.9	39.15
Zm00001d010232_P001	Maize	nucleus	53.9	39.15
Os05t0423400-01	Rice	nucleus	53.9	38.6
Zm00001d042618_P001	Maize	nucleus	55.84	38.22
TraesCS1D01G264500.1	Wheat	nucleus	52.6	37.16
HORVU1Hr1G063620.1	Barley	nucleus	53.25	36.77
CDY69833	Canola	nucleus	37.66	32.77
Zm00001d010233_P004	Maize	nucleus	52.6	31.64
HORVU3Hr1G091000.8	Barley	nucleus, plastid	55.84	31.5
CDY45758	Canola	nucleus	42.21	26.86
CDY02217	Canola	nucleus	41.56	26.67
CDX87180	Canola	nucleus	41.56	26.12
CDY13200	Canola	nucleus	37.66	25.89
CDX76152	Canola	nucleus	37.01	25.45
CDX73487	Canola	nucleus	37.01	24.57
CDY40800	Canola	nucleus	38.31	24.38
CDY69354	Canola	nucleus	37.66	23.97
CDY16841	Canola	nucleus	41.56	20.13
PGSC0003DMT400019069	Potato	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078HG71	UniProt:A0A078HG71	EnsemblPlants:CDY35823	ProteinID:CDY35823
ProteinID:CDY35823.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00059332001	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF354	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EDCFA2	:

Description

BnaC09g37550DBnaC09g37550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG71]

Coordinates

chrLK032362:-:106606..108322

Molecular Weight (calculated)

17591.4 Da

IEP (calculated)

9.177

GRAVY (calculated)

-0.632

Length

154 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENVNNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDKIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAVEH GLDKVRDHQA YGVPYDKKEK CDHI

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.