CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90370
EER97012
EES15309
KXG27287
OQU91278

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	KXG27287	AT1G22920.1	21798944
AT5G20240.1	EER97012	AT3G02310.1	15604664
AT5G20240.1	EES15309	AT3G02310.1	15604664
AT5G20240.1	EER90370	AT3G54340.1	15604664
AT5G20240.1	OQU91278	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010232_P001	Maize	nucleus	92.92	92.92
Os05t0423400-01	Rice	nucleus	80.66	79.53
TraesCS1A01G264300.1	Wheat	nucleus	77.83	79.33
TraesCS1B01G275000.1	Wheat	nucleus	76.89	78.37
EES01864	Sorghum	nucleus	75.94	77.03
Zm00001d010233_P004	Maize	nucleus	91.51	75.78
HORVU1Hr1G063620.1	Barley	nucleus	77.36	73.54
GSMUA_Achr6P18670_001	Banana	nucleus	64.15	64.45
TraesCS1D01G264500.1	Wheat	nucleus	65.09	63.3
GSMUA_Achr5P01230_001	Banana	nucleus	62.74	63.03
KRH16433	Soybean	nucleus	58.49	59.62
KRH18034	Soybean	nucleus	58.02	59.13
Bra002285.1-P	Field mustard	nucleus	40.57	58.9
KRH53304	Soybean	nucleus	50.0	58.56
KRH64611	Soybean	nucleus	50.0	58.56
VIT_18s0001g01760.t01	Wine grape	nucleus	58.49	58.49
Solyc06g059970.2.1	Tomato	nucleus	56.13	55.61
CDY60377	Canola	nucleus	51.89	54.19
CDX88846	Canola	nucleus	51.89	54.19
CDY35823	Canola	nucleus	39.15	53.9
CDY45099	Canola	nucleus	50.94	53.2
Bra020093.1-P	Field mustard	nucleus	50.47	52.71
CDX92479	Canola	nucleus	38.21	52.6
AT5G20240.1	Thale cress	nucleus	50.94	51.92
Bra006549.1-P	Field mustard	nucleus	50.94	51.92
Solyc08g067230.2.1	Tomato	nucleus	50.0	50.48
PGSC0003DMT400019070	Potato	nucleus	48.58	49.05
EES06346	Sorghum	nucleus	41.98	34.5
EER90370	Sorghum	nucleus	35.85	33.63
PGSC0003DMT400019069	Potato	cytosol	8.96	31.67
KXG20558	Sorghum	nucleus	31.6	28.03
KXG33296	Sorghum	nucleus	25.94	27.92
OQU82318	Sorghum	nucleus	33.02	27.24

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8058469	UniProt:C5YY69	ncoils:Coil	EnsemblPlants:EES18254
ProteinID:EES18254	ProteinID:EES18254.1	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF211	SMART:SM00432	EnsemblPlantsGene:SORBI_3009G142500	SUPFAM:SSF55455
unigene:Sbi.3168	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001A88788	RefSeq:XP_002439824.1

Description

hypothetical protein

Coordinates

chr9:+:49983761..49985964

Molecular Weight (calculated)

24766.8 Da

IEP (calculated)

9.730

GRAVY (calculated)

-0.914

Length

212 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSTNRQVT VSKRRAGLVK KAREIGVLCD AEVGVVIFSS GGKLHDYCSP RTSLSRILEK YQTNSGKILW DEKHKILSAE IDRIKKENDN
101: MQIQLRHLKG EDLNSLQPRE LIAIEEGLQN GQTNMREKQM DHWRMRKRNG KMLEDENRML SFRMHQQAVD LSGGMRELEI GYHQVQHDRE FTSQMPFTFR
201: VQPNHPNLQE DE

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.